Protein Info for MPMX19_04959 in Azospirillum sp. SherDot2

Annotation: 5-oxoprolinase subunit A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 253 PF03746: LamB_YcsF" amino acids 4 to 243 (240 residues), 335.4 bits, see alignment E=1.1e-104

Best Hits

Swiss-Prot: 60% identical to PXPA_RHOPT: 5-oxoprolinase subunit A (pxpA) from Rhodopseudomonas palustris (strain TIE-1)

KEGG orthology group: K07160, UPF0271 protein (inferred from 60% identity to rpt:Rpal_2956)

Predicted SEED Role

"Lactam utilization protein LamB"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (253 amino acids)

>MPMX19_04959 5-oxoprolinase subunit A (Azospirillum sp. SherDot2)
MPSIDLNCDMGEGYGAWTMGDDRAMLDIVTSANIACGFHAGDPTIMADTAKLAGEKGVRI
GAHPGFEDRSGFGRRVMRGIATTEVERLVAYQVGALQACAALSGRRVTHVKPHGALYNMA
AVEPDLAGAIARAVRAVDPALLFVVPPLSAMERAGQDLGLRVAREAFADRTYEDDGTLTP
RNVAGSVIHDPDLAAARVVRMVLDGAVESRHGTRLPIVADTICVHGDTPTAVAMAATVRR
ALEAAGVVVAAVV