Protein Info for MPMX19_04927 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 563 signal peptide" amino acids 25 to 25 (1 residues), see Phobius details amino acids 47 to 49 (3 residues), see Phobius details transmembrane" amino acids 26 to 46 (21 residues), see Phobius details amino acids 310 to 331 (22 residues), see Phobius details PF00672: HAMP" amino acids 331 to 381 (51 residues), 36.1 bits, see alignment 6.4e-13 TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 390 to 551 (162 residues), 141 bits, see alignment E=1.5e-45 PF00990: GGDEF" amino acids 394 to 550 (157 residues), 156 bits, see alignment E=7.4e-50

Best Hits

Predicted SEED Role

"diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)" in subsystem Bacterial hemoglobins

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (563 amino acids)

>MPMX19_04927 hypothetical protein (Azospirillum sp. SherDot2)
MTAIGQPSGSTAGKSSMPARKPGRAFGLRATVAVTVAVLLLGSTLVKGLVVGNGAADALA
KEVGNSMTGLAQSLARQLDSTMWARANQIAALSRIEALKDPAVAQSTIDELKRRDPTIAW
IGMTDVNGRVVAASNGLLMGADISTRPVHQEGMKGLYVGDVHEAVALRGKVPYLEGETPK
FVDVSAPLQKADGSMVGVLATHYSWEWAHALIRQLVEPLADHKGLTLYILSADGTVLIGP
DSAVGKPLPVPTLNSKARDGWRSEVWPDGITYVTGVAHGKGLHDYAGLGWTVVASQPADI
VNAETDRLRTMIVGVGALLALLFSGLGWIAAGRIARPLGAIADAAEQIGKGERGVAIPDV
GGAAEIRRLSASLREMIDSLTNKDAALMRLEDIAYEDRLTALPNRRYFEQYVEASTGTGG
GSATVMYIDLDGFKPVNDRLGHDAGDVVLRQIGGRLASIFRDDDVVARLGGDEFAAVLPR
RADRPAPDTAELAARIIAAVNEPVSFNGERIRVGCSIGIASWPDDDSDMATVMRHADAAL
YKAKRDGRNRAVRWMRSVMATEG