Protein Info for MPMX19_04923 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 416 transmembrane" amino acids 27 to 52 (26 residues), see Phobius details amino acids 196 to 221 (26 residues), see Phobius details amino acids 230 to 253 (24 residues), see Phobius details amino acids 281 to 302 (22 residues), see Phobius details amino acids 334 to 357 (24 residues), see Phobius details amino acids 380 to 401 (22 residues), see Phobius details PF00528: BPD_transp_1" amino acids 213 to 401 (189 residues), 32.6 bits, see alignment E=3.4e-12

Best Hits

KEGG orthology group: K02054, putative spermidine/putrescine transport system permease protein (inferred from 92% identity to azl:AZL_c00230)

Predicted SEED Role

"Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1)" in subsystem Polyamine Metabolism (TC 3.A.1.11.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (416 amino acids)

>MPMX19_04923 hypothetical protein (Azospirillum sp. SherDot2)
MTAAFVAGADVPLKRRLKRAERARQFRALGLVLPLLAFLLFTFVVPLAGMIWKSADDWEV
PQVMPQTVAALEHWNGQGLPDEAAFAALAADMRTAREAGTLAVAAKRLNYIVNGYRTTLL
STARKLKEQPAPGTAKETMIGLSPAWGERESWTAIKSASGPVTSYYLLAAVDLTRNADGA
IVAAPPDQAIYRDVFIRTFTIGFGVTALCLILGFPVAYLLANLPTGRSNLLMIFVLLPFW
TSLLVRTCAWIVILQSEGIVNGSLQWLGVIDEPMRLIYNRFGVYMAMTHVLLPFMILPLY
SVMRGISPAYMRAAASLGAPPATAFMRIYLPQTIPGIGAGCLLVFILAIGYYITPALVGG
AADQMISSFIAFYTTETVNWGLASALGAVLLLSTLVLALVYGKLALGRQTTGGLKN