Protein Info for MPMX19_04880 in Azospirillum sp. SherDot2

Annotation: Inner membrane ABC transporter permease protein YdcV

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 277 transmembrane" amino acids 7 to 30 (24 residues), see Phobius details amino acids 60 to 85 (26 residues), see Phobius details amino acids 97 to 122 (26 residues), see Phobius details amino acids 135 to 158 (24 residues), see Phobius details amino acids 179 to 201 (23 residues), see Phobius details amino acids 237 to 259 (23 residues), see Phobius details PF00528: BPD_transp_1" amino acids 78 to 266 (189 residues), 59.8 bits, see alignment E=1.6e-20

Best Hits

Swiss-Prot: 63% identical to POTI_ECOL6: Putrescine transport system permease protein PotI (potI) from Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)

KEGG orthology group: K11074, putrescine transport system permease protein (inferred from 98% identity to azl:AZL_c00720)

MetaCyc: 63% identical to putrescine ABC transporter membrane subunit PotI (Escherichia coli K-12 substr. MG1655)
ABC-25-RXN [EC: 7.6.2.11, 7.6.2.16]

Predicted SEED Role

"Putrescine transport system permease protein PotI (TC 3.A.1.11.2)" in subsystem Polyamine Metabolism (TC 3.A.1.11.2)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.6.2.11 or 7.6.2.16

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (277 amino acids)

>MPMX19_04880 Inner membrane ABC transporter permease protein YdcV (Azospirillum sp. SherDot2)
MKRFGFLSWALLFGYAFLYVPIALLVVFSFNESRLVTVWSGFSTKWYAELLHNDALLDAA
FLSFQVAAVSATLSVLLGTCAGLALTRFGRFRGRTLFGGMITAPLVMPEVITGLSLLLLF
VAMEQWLGWPDGRGVTTITIAHTTFTMSYVAVVIQSRLAGMDGSLEEAAMDLGARPAKVF
FVITLPLIAPALVAGWLLAFTLSLDDVVVASFVSGPGSTTLPMVIFSSVKFGISPQINAL
ATLMVLVVATGIFVASIVMARQERQRKRDEQMAIQNG