Protein Info for MPMX19_04869 in Azospirillum sp. SherDot2

Annotation: DNA polymerase I

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 974 TIGR00593: DNA polymerase I" amino acids 31 to 974 (944 residues), 932.9 bits, see alignment E=1.3e-284 PF02739: 5_3_exonuc_N" amino acids 31 to 192 (162 residues), 187.9 bits, see alignment E=2.3e-59 PF01367: 5_3_exonuc" amino acids 193 to 288 (96 residues), 104.5 bits, see alignment E=7.1e-34 PF01612: DNA_pol_A_exo1" amino acids 364 to 562 (199 residues), 111.4 bits, see alignment E=8.6e-36 PF00476: DNA_pol_A" amino acids 595 to 972 (378 residues), 516.8 bits, see alignment E=7e-159

Best Hits

KEGG orthology group: K02335, DNA polymerase I [EC: 2.7.7.7] (inferred from 91% identity to azl:AZL_c04610)

Predicted SEED Role

"DNA polymerase I (EC 2.7.7.7)" in subsystem DNA-replication or DNA Repair Base Excision (EC 2.7.7.7)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.7.7.7

Use Curated BLAST to search for 2.7.7.7

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (974 amino acids)

>MPMX19_04869 DNA polymerase I (Azospirillum sp. SherDot2)
MTDATAASENTPATGSPASGGTNSGGDGSGLYLVDGSGFIFRAFHALPMLTRPDGTPVNA
VLGFSNMLLKLLADAKAEAVAVVFDSKRLNFRNEFYPDYKAHRPEPPEELKPQFALIREA
TEAFCLPCLELEGFEADDLIATYARLAQEAGRPVTIVSSDKDLMQLVRPGVGMFDPMKNK
AIGPDEVFEKFGVPPDKVVDVQALAGDSVDNVPGVPGIGVKTAAQLITEYGDLEALLANA
EKIKQPARRQKLIEFADLARISRRLVLLDENVPPPKPLDDLRVREPDHQRLIDFLRAQGF
RSIVSRVEMEMQKDGRIADGASGSLPAPGSMPTPAAKSPATAESPAAEDRPARKTVLNVP
EVRYELVQDADALRRWVERARETGVLAVDTETDSLTPATATLVGVSLSTEPGIACYIPLA
HKAEGAAAAGQLDFEAPTPPAQIPTDEAMAILKDVLEDRSVLKIGHNFKFDHQLFARNGI
AVSPVDDSMLISYVLEGGSHGHGMDELAELHLAYTPIPFKEVCGTGKNQITFDRVPLDKA
LAYAAEDADITLRLWTLLKPRLVDDRMVTVYETLDRPLVPVVADMERAGVHIDKKALSDL
SQSLSLRLAEIEKDVHALAGQSFNIGSPKQLGEILFDTLKLGTGKKGKTGAYSTDSSVLE
ELAEQGHTIAQRVLDWRQLAKLKSTYTDALQEKISPVTGRVHTAFALAATNTGRLSSTDP
NLQNIPVRTEEGKKIRRAFVASPGYKLLSVDYSQIELRLVAEMANIQALKDAFRDGLDIH
AATAAQVFGIPLEQMTPDIRRKAKAINFGIIYGISGFGLGRQLGIAPGEANAFIKTYLER
FHELKVWMEATKAFARQHGYVATLFGRRCYMPGIQEKNAARRAFAERQAINAPIQGTAAD
IMKRAMNRMPGALAAAGSSARMLLQVHDELLFEVPEAEAEDAARIVREVMEGAATLGVPL
VAEAGIGDNWEEAH