Protein Info for MPMX19_04859 in Azospirillum sp. SherDot2

Annotation: Vitamin B12 import ATP-binding protein BtuD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1361 transmembrane" amino acids 53 to 76 (24 residues), see Phobius details amino acids 87 to 107 (21 residues), see Phobius details amino acids 165 to 209 (45 residues), see Phobius details amino acids 275 to 298 (24 residues), see Phobius details amino acids 301 to 312 (12 residues), see Phobius details amino acids 778 to 804 (27 residues), see Phobius details amino acids 816 to 834 (19 residues), see Phobius details amino acids 896 to 915 (20 residues), see Phobius details amino acids 921 to 941 (21 residues), see Phobius details amino acids 1004 to 1028 (25 residues), see Phobius details amino acids 1034 to 1056 (23 residues), see Phobius details PF00664: ABC_membrane" amino acids 53 to 315 (263 residues), 88.7 bits, see alignment E=8.4e-29 amino acids 781 to 1043 (263 residues), 80.5 bits, see alignment E=2.6e-26 PF00005: ABC_tran" amino acids 394 to 541 (148 residues), 66.2 bits, see alignment E=7.8e-22 amino acids 1115 to 1262 (148 residues), 100.1 bits, see alignment E=2.6e-32

Best Hits

KEGG orthology group: None (inferred from 89% identity to azl:AZL_c04570)

Predicted SEED Role

"Isoquinoline 1-oxidoreductase beta subunit (EC 1.3.99.16)" in subsystem N-heterocyclic aromatic compound degradation (EC 1.3.99.16)

Isozymes

Compare fitness of predicted isozymes for: 1.3.99.16

Use Curated BLAST to search for 1.3.99.16

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1361 amino acids)

>MPMX19_04859 Vitamin B12 import ATP-binding protein BtuD (Azospirillum sp. SherDot2)
MQPAPQPTSRTTSSADSAKASADRDRADSNRAAEKAARRLLSGMLGPRRDRGMLILASFA
LNIFGLALPVTLLHVYDRILPNESYGTMLLLGIGCGAAAVMEAILRVARSALTTWMGARI
EHQSSASLIDRLMHMPLNAFSQQGIGTHFEVYRAIKLVREFYSGQALQSAIDIPFAVLYL
GLIALLAGWLAAIPVAVLGLFLIVGAVLGRRMRRALESRHTLEERRLNFISEVLGGVHTV
KGLGAEAGLLRRHERLQQGCSEEDFTVARLSGTASVVAGTLAQATMMLVVLLGSVSVIDG
AMTTGVLTACSMLAGRCVQPVQALFDRWVRYQSVSLALRRIGHVLLEVGSDGAAAPVARD
GYPEADGAVATPLAPGSIEMDKVSFAYDRGPEILSGLSLSVGPGEFLGVVATNSSGKTTL
LRLILGVLRPRSGEVRVGVRTLTGADAMIGIGGVVYVGEHPELFKGTILQNLTLFDPSRA
DLAMEVCRRLGLDRRIASLPQGYETIVGDASQEALPRGARQMICLARALVREPAVLLLDE
PNSSLDVESDKAFRRALDGLRGSVTILLVSSRPSLLSLADRVVQIVDGHAVARNPAAEAI
GGQPALVAAVSSAVQPDAEAGTDAEPIRAAHDDGDILRRRLAEASAVGACMVPLLDALGW
RGAPQTLAEALPHFSEVQTVEELCDVFQRLHFEGRSLRFDLGRPESSLMPCLFRARDGGI
YTLLSADADGVTAFSGQSRETVTLNYGKGTAYVFTPREAASGAGNQNWVGSVIHAYFPLL
WAVLGLSAVINLLSVAAPLFTMAIYDKVIGTGSFDTLATIAVGAFLVIAGDFALRQIRGR
ALAHAGSRIARTVSNATIDRILMLPVGMSERAAIGTQIARVKDLESIRDFISQGQVAALF
DVPFALFYLGVMAVLGGPLALVPLAAVLVTAAIGAAVHPLVRARTGTTARADTERQEFFV
EMVAKMPALRAIGGLAHWRDRYDRLSARTARSGHTAANLSATHAALAGLVVPVAGLATVG
VGALQVFAGTMTPGALMASMMLLWRVMVPLQTAVSMLPRIEQLRANARQINGLMSIRPER
EPRCATLQPRKLKGEVSFSRVSLRYRNDADPALVGVTFNVKPGQIVAIVGPDGAGKSSLL
KVMLGLYAPQAGNVRVDGVDIRQMDPVDLRKSIGYVPQASSLFYGTIAQNLRFADQTADE
AELRWALSLAGALDEVEALPRGLDTRIGDNQSLRLSPSLTQKICLARAYIRRPRILLLDE
PASRLDFEGDKALHAALAALRGHSTIFLVTHRPSHLTLADTVLTMDAGMIGPAPAGGLPG
PRPVGPGTGPGGNSVANGIAGALLGGIGLQRPPGVAATPQR