Protein Info for MPMX19_04778 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 345 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details PF13531: SBP_bac_11" amino acids 35 to 286 (252 residues), 86 bits, see alignment E=7e-28 PF01547: SBP_bac_1" amino acids 43 to 285 (243 residues), 75 bits, see alignment E=2.2e-24 PF13416: SBP_bac_8" amino acids 45 to 306 (262 residues), 99.3 bits, see alignment E=7.1e-32 PF13343: SBP_bac_6" amino acids 80 to 320 (241 residues), 121.5 bits, see alignment E=8.8e-39

Best Hits

KEGG orthology group: K02012, iron(III) transport system substrate-binding protein (inferred from 62% identity to lch:Lcho_4317)

Predicted SEED Role

"Ferric iron ABC transporter, iron-binding protein" in subsystem Campylobacter Iron Metabolism or Iron acquisition in Vibrio or Transport of Iron

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (345 amino acids)

>MPMX19_04778 hypothetical protein (Azospirillum sp. SherDot2)
MVGAVAKMKSVGVGIGALVALAAIPAYAQGSVTVMCGVQEEWCKAMVVAFEKKTGIGVAM
TRKSAGEALAQIRAEAANPKIDIWWGSSGDPHLQAAEEGLTVAYESGQMKDLQSWAESQY
KQSQGRSVGIYAGALGFVYNTEMLAKRGIQPPKCWADLLRPEFKGEIQMPNPNSSGGAYT
AVATLVQIFGEDAGFDYLKKLNESVNQYTKSGAAPAAAVARGETLVGISWVNDSVIQKVN
KFPVEISTPCEGTGYEIGSMSILKGAKNLEAAKKFYDFALTPEAQDYGATNFQMTPSNKR
SVLPPDAPKFEDVRLIDYNFQKYGMAEERKRLLGRWDAEIKSAAN