Protein Info for MPMX19_04777 in Azospirillum sp. SherDot2

Annotation: Sensor histidine kinase RcsC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 911 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 318 to 338 (21 residues), see Phobius details PF00672: HAMP" amino acids 338 to 386 (49 residues), 30.3 bits, see alignment 1.8e-10 TIGR00229: PAS domain S-box protein" amino acids 399 to 524 (126 residues), 38.2 bits, see alignment E=7e-14 PF00989: PAS" amino acids 403 to 453 (51 residues), 24.6 bits, see alignment 8.6e-09 PF08448: PAS_4" amino acids 410 to 518 (109 residues), 31 bits, see alignment E=1e-10 PF12860: PAS_7" amino acids 410 to 521 (112 residues), 77.7 bits, see alignment E=3.3e-25 PF00512: HisKA" amino acids 534 to 597 (64 residues), 30.7 bits, see alignment 1.1e-10 PF02518: HATPase_c" amino acids 640 to 753 (114 residues), 77.5 bits, see alignment E=4.2e-25 PF00072: Response_reg" amino acids 777 to 887 (111 residues), 44.7 bits, see alignment E=5.4e-15

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (911 amino acids)

>MPMX19_04777 Sensor histidine kinase RcsC (Azospirillum sp. SherDot2)
MLSPVSVRGRLLAAFGAMVVLTTAVGGVGWFGLGETERALLSLQREGLGNIALAMRMAEL
STGLAARAPFIAAIEATPSLDEERSQLELKLADLTGLVNRLPGLERASLHVPSDVPSLVR
LAGRLDGTLRNLMDVTGEAIAVRAEASAIRLGLEHQRILGETLAGAAARTFEHPGFPGLE
GTGAPPLPFSVLRLADRTRDAVSAALTTTNPADLARWYGGFDADRQSLRAIDTTAPALAI
MAPSLDQLLTVLDTQSSVFDIRTRQLGIEQRSRFLVAAANTLSVQLNREVESVTSTMQTA
ARSRGDATFSALSSGKASILALGALCALAAIAAAVYVMRDVAGNLRAVTRAMSALAGGDR
LVSVPATGRPDEIGDLARAFSVFKENVAERDALARKLGENSRMLEAVFVNMNDGLSVFDE
NGRLVTWNPRFLDLNGFTPAEVAGRELAELQRSLLRRGVGIRMLDGSSVDLDALTRLRTE
QAVRCEHHFPDGRVVELHSSPMPSGGFITTYSDLTERKDIEKQLRHALKMEAVGQLTGGI
AHDFNNLLAAIMGNLQMIHDESPEQDPVRGKALRALDAAERGATTIQRLLAFSRQQALQP
QAVDLNELVEGMLDLLAYGLGGGIVLKTALTPGLPPALVDPGQLENALLNLVVNARDAMP
DGGTIVIATEAATQDSRQDGSDAIVLSVRDDGSGMPPAVLSRVFEPFFTTKRFGRGSGLG
LSMVYGFVRQSGGKVDIQSEAGVGTLVAMAFPRARMLPETRVLPRDPSPVEGGPERILVV
EDDPAVRTTTVDMLTALGYRAVPAASAEEALLLLEGTAFDLLFTDVILTGGMNGPALVAI
AKIRQPTLQTLFCSGYARDFLVESASLPLDIHFIQKPYQKPLLAAQIRNVLGGAPAAARG
RAEISALPGQP