Protein Info for MPMX19_04752 in Azospirillum sp. SherDot2

Annotation: putative transporter YycB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 422 transmembrane" amino acids 38 to 59 (22 residues), see Phobius details amino acids 79 to 98 (20 residues), see Phobius details amino acids 110 to 127 (18 residues), see Phobius details amino acids 133 to 155 (23 residues), see Phobius details amino acids 167 to 186 (20 residues), see Phobius details amino acids 194 to 216 (23 residues), see Phobius details amino acids 239 to 262 (24 residues), see Phobius details amino acids 274 to 296 (23 residues), see Phobius details amino acids 305 to 325 (21 residues), see Phobius details amino acids 331 to 352 (22 residues), see Phobius details amino acids 371 to 389 (19 residues), see Phobius details amino acids 395 to 414 (20 residues), see Phobius details PF07690: MFS_1" amino acids 59 to 260 (202 residues), 53.4 bits, see alignment E=1e-18 amino acids 249 to 416 (168 residues), 45.3 bits, see alignment E=3e-16

Best Hits

KEGG orthology group: K03449, MFS transporter, CP family, cyanate transporter (inferred from 56% identity to pfl:PFL_1055)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (422 amino acids)

>MPMX19_04752 putative transporter YycB (Azospirillum sp. SherDot2)
MTIESAAGRSAEPPSGGPAATRPAPLPTKNSQAENPALHHPLLVAVTLVLVALNLRPALS
SLAPVMGDVVRDAGLSSGQAGLLTTSPVLCLGLFGVIAPRLAQRFGTERTIFFTLLVLGF
GVALRGVGNFAALFAGATLAGAGIGIIGVLLPAVVKRDFPRKISLMMGVYTMALCAGAAT
AAGATVPLERALGQWTGALAFWAVPAVVAALAWLPLTRGRQSEAGPAGASVRGLWGNRLA
WQITLFMGLQSALAYIVLGWMAPMLRDRGFDPTTAGLIVSGSVMVQVVAALVAPMLATRT
PSQSFAAVSMLGCSLVGMVGCLYAPLWTIALWAVILGIGQGGAFAVALTLIVLRSPDSRI
ASHLSGMSQSVGYTLASGGPFLVGLLHGWSGDWHASALLFVVIAVAAAVFGYLAGRPRQL
RL