Protein Info for MPMX19_04680 in Azospirillum sp. SherDot2

Annotation: Inner membrane ABC transporter permease protein YdcV

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 278 transmembrane" amino acids 21 to 48 (28 residues), see Phobius details amino acids 83 to 105 (23 residues), see Phobius details amino acids 117 to 139 (23 residues), see Phobius details amino acids 145 to 164 (20 residues), see Phobius details amino acids 199 to 216 (18 residues), see Phobius details amino acids 247 to 267 (21 residues), see Phobius details PF00528: BPD_transp_1" amino acids 94 to 266 (173 residues), 46.6 bits, see alignment E=1.7e-16

Best Hits

KEGG orthology group: K02053, putative spermidine/putrescine transport system permease protein (inferred from 76% identity to azc:AZC_1969)

Predicted SEED Role

"Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1)" in subsystem Polyamine Metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (278 amino acids)

>MPMX19_04680 Inner membrane ABC transporter permease protein YdcV (Azospirillum sp. SherDot2)
MSDYAKPVSGGRRIDFDALSFRIVMTGIALMALVLLVAPTVVVIWVSFTSGYSLKFPPPG
YSLRWYAELWDAWQLQFAMMNSLTVAAWATGLSILLGVSASLGIARSPTLTAKVLDSLFL
SPLVLPALAFGLSSLMFFSMIGVPVSPLTLIIGHTVVSVPFVVRNTVASLAQMNPSLLEA
SSSLGAGRWYGFRRVTLPLIRPGIMAGGFIAFMASFDNVPVSLFLRDAATDMLPIRMWQD
LEGRLDVTVAALSGVLIVVTIGLMLVMERVAGLSKRLT