Protein Info for MPMX19_04624 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 893 PF13432: TPR_16" amino acids 28 to 85 (58 residues), 23.2 bits, see alignment 4.2e-08 amino acids 65 to 119 (55 residues), 23.1 bits, see alignment 4.6e-08 amino acids 158 to 219 (62 residues), 19.9 bits, see alignment 4.7e-07 amino acids 428 to 461 (34 residues), 16 bits, see alignment (E = 7.5e-06) PF13181: TPR_8" amino acids 430 to 460 (31 residues), 12.7 bits, see alignment (E = 6.8e-05) PF13844: Glyco_transf_41" amino acids 502 to 656 (155 residues), 63.1 bits, see alignment E=9e-21 amino acids 683 to 857 (175 residues), 53.6 bits, see alignment E=6.8e-18

Best Hits

KEGG orthology group: None (inferred from 80% identity to azl:AZL_a11310)

Predicted SEED Role

"TPR domain protein, putative component of TonB system" in subsystem Ton and Tol transport systems

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (893 amino acids)

>MPMX19_04624 hypothetical protein (Azospirillum sp. SherDot2)
MKPNQRPPHRPAGTADAQALLTRAVTHHQTGQLAEAATLYEQVLKRLPKQADALHLSGLI
KAQTGAVPEGIERIRQAVKADPRQPLFHANLGRLLEAAEQWEDAATAFRSAGRLAPLDPS
LPRMEAAAWTKLGRQDAAAPPLLRAMALEPADAGSAADLGDALYDCGRFLPAADWYGRAA
ALEPHRVLAAFNRGAALRDGGRIAEAAAAFRALAGRAPEMVEPLEHSMQLSQQLGQHLGA
GTAARRLLALVPAQAAAVRSLGSAETGPAQEPVWLARLARLEPLADDVVLALAGRLYGRR
RIAAAERAYRHALALRPESGLALSGLGLARATLGMAGAVPAVLRAVRVAPDDAALAANAG
SAFQLALQPEAALSWHRRALVLTPDAVAAWVNIGTLLLEANAAEEAIPPLDRAGRLGDIT
RDMDQLALANSNLGVARMALGLHGEAVAAFRAALDRTPDDASIRSNMLFCLCFDDRADPV
EVFREHRAFERHLPAVPAAPHAVESRDPERRLRVGYLSPDFQRYPGPGYHFLLPLIEGHN
RGRVEVTCYHSDRSRDATTDRFQAAADRWRDVAVLTDEELDRRIREDRIDILVDAGGHMS
RNRMPLMARRPAPVQVSLPLYPNTTGLGAVDYQIADPRVAPPGADALHAEKLIRLPGCVL
CYRPADSAFAPPILPPVEGRGHITFGSFNNITKVNAATIALWARLLALVPTAKLVLKWRG
LGSGGGADRRLLAAFAGHGIGLGRLELRGITPDPYQDYVTIDVALDPVFANGGTTICDAL
WMGVPVLNRTGPTKIGHWGATLLDAVGMAELVTRDDEAYLAQGVRLATDRAFLDAQREDL
RERMRRSALMDEPGYARAVEAGYRTAWRRWCAGLPAVAFDVAAFDVSEGEGRR