Protein Info for MPMX19_04595 in Azospirillum sp. SherDot2

Annotation: Inner membrane protein CreD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 458 transmembrane" amino acids 34 to 55 (22 residues), see Phobius details amino acids 325 to 343 (19 residues), see Phobius details amino acids 350 to 371 (22 residues), see Phobius details amino acids 377 to 397 (21 residues), see Phobius details amino acids 405 to 423 (19 residues), see Phobius details amino acids 429 to 448 (20 residues), see Phobius details PF06123: CreD" amino acids 32 to 454 (423 residues), 342.3 bits, see alignment E=2.1e-106

Best Hits

KEGG orthology group: K06143, inner membrane protein (inferred from 92% identity to azl:AZL_c03580)

Predicted SEED Role

"Inner membrane protein CreD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (458 amino acids)

>MPMX19_04595 Inner membrane protein CreD (Azospirillum sp. SherDot2)
MTVPSDNPAASSLGPAIAGASPPPARRNRRSAKFLQIVLLLVVTLIAGLPVSGIIGERSD
RQAEMQEELARSWSPEQTVRTPVLAVPYLAADGKTRGYLKIVPATLATQAALAPERKKRG
LFSATVYTAALEMTGSFAVPSASSLEKLVGRGGSISWQDSVFLLQLSGLAGMTTEDRVVW
NGETIPWRGCHELVARAEDCWGAALAARPTIAAAPAASVEMKFQATVTLRGTGAFHQTLD
GRQATAAIKAPWPTPSFVGTVLPSDPTVTADAFEARWTVSDYSRPPLRSDAALLDSAEAQ
YLPSVGVELLEAVPTYRMINRASKYASLFVVLSFTVYGLFELLSSVRIHIVQYGLLGLSM
TLFSLLLVSFAEPFGYVAGYWISAALVLVQATAYTAAVTRRARSTLVFAAALASLFAFLH
LLIGLENYSLLVGTIALFLVLSAVMAVTQRVDWQGDES