Protein Info for MPMX19_04585 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 386 transmembrane" amino acids 20 to 41 (22 residues), see Phobius details amino acids 50 to 82 (33 residues), see Phobius details amino acids 129 to 152 (24 residues), see Phobius details amino acids 159 to 178 (20 residues), see Phobius details amino acids 207 to 227 (21 residues), see Phobius details amino acids 254 to 275 (22 residues), see Phobius details amino acids 295 to 319 (25 residues), see Phobius details amino acids 331 to 355 (25 residues), see Phobius details TIGR03408: urea ABC transporter, permease protein UrtC" amino acids 37 to 354 (318 residues), 444.6 bits, see alignment E=1.3e-137 PF02653: BPD_transp_2" amino acids 44 to 344 (301 residues), 126.9 bits, see alignment E=4.1e-41

Best Hits

KEGG orthology group: K01998, branched-chain amino acid transport system permease protein (inferred from 78% identity to azc:AZC_4104)

Predicted SEED Role

"Urea ABC transporter, permease protein UrtC" in subsystem Urea decomposition

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (386 amino acids)

>MPMX19_04585 hypothetical protein (Azospirillum sp. SherDot2)
MTRTPHSLPRGRLLGRIDGDIAGILLLAALLIVVLPLGLDIFRLNMVGKYLTYAFVALGL
VLCWGSAGILSLGQGIFFGIGGYCMAMFLKLEASSPEATKIQSTPGIPDFMDWNQLKALP
WFWEPFHSLTFATVAVVAVPALLAFIVGLAMFKRRVGGVYFAIITQAFAAILTILIVGQQ
GYTGGINGITDLRTLKGWDIRTDEAKLVLYFVNAALLIGCILLCLYVRRSKLGRILVALR
DKEDRVRFSGYDVANFKIFVFCFAAALSAVGGAMFTLQVGFMSPSFVGIVPSIEMVIYCA
VGGRLSLLGAVYGTLLVNWAKTMLSESFPELWLFAMGALFIGVVMVFPNGLAGLYQQFIA
PRLGRLLPRTGSGAGAPIIPPHTAAD