Protein Info for MPMX19_04558 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 875 transmembrane" amino acids 37 to 58 (22 residues), see Phobius details amino acids 213 to 235 (23 residues), see Phobius details PF00672: HAMP" amino acids 236 to 295 (60 residues), 30 bits, see alignment 7.8e-11 TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 447 to 608 (162 residues), 114.7 bits, see alignment E=1.8e-37 PF00990: GGDEF" amino acids 450 to 604 (155 residues), 120 bits, see alignment E=1.3e-38 PF00563: EAL" amino acids 625 to 859 (235 residues), 249 bits, see alignment E=6.3e-78

Best Hits

KEGG orthology group: None (inferred from 84% identity to azl:AZL_a10540)

Predicted SEED Role

"diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)" in subsystem Bacterial hemoglobins

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (875 amino acids)

>MPMX19_04558 hypothetical protein (Azospirillum sp. SherDot2)
MTDIVSEESGALPGGMHDRAGPGSGSGTGRRTLTIARSALLLAAALVVCLAVMLAVGLQL
MQGMDRVADGWRDYDLQAATKSDALSEVRGHLGLGGVIDHFREGAQAGTAGHAAGDHAAL
DRALALSRANLAIYRDIVTPGEDEARAIAAIAAFLDAIQVQMEDPAAAIPAEAFDACRRD
AVRGLAALNSHLSAQRARLTAATLTDIEDLQRLMAVGGGIIAALVLALAGTAVWFTRSRI
VGPLGRLVEDARRLARRDLDRPFQGWGRRREPGFRRDELGLLGRSLEDSRTALRDLFAAI
EEKTRRLGESERRYAMAAAATNDGLWDWDLESGDFYLSARLRQMLHLPADSGDPGLAALL
AHIHPDDRHAVLAAIRQGEHGADGASFDVEFRVLPPNPKPDGPTPEDATRWLHLHGIVAA
GPDGRSARLAGSAADVSDRKSYEARLVHQATHDFLTGLPNRAYLIHWLRGSRAAEGIGRS
DLALLFLDLDGFKVVNDSLGHAVGDRVLVATAERIAGLMEAGEFVVRLGGDEFVVAVPSG
REAAIARAQGLETAFQRPLCVGGMELRVGLSIGLAVDDGTSDDPDGLLRDADIALYRAKE
HGKGRTVLFDASLREAILIRSRLQRDLTPSLEAGDIFLVYQPIVSLPDGRLTGFEALVRW
RHPDLGPVSPAQFIPIAEETGQILPLGRHVLERAVEQLGRWRRMAGGAALTVNVNLSARQ
MWDERYVDDMLAFLAGGRADGLKVEVTESMTVADHDQARAILERFHALGVALCMDDFGTG
YSSLSHLGSLPFDIVKIDKSFVSALGSDPRQESLLRGIVELAHRIGLEVVAEGVETEEER
AVLTRIGCDYAQGYLFARPLSVADAEALLLAAGRP