Protein Info for MPMX19_04555 in Azospirillum sp. SherDot2

Annotation: Sensor histidine kinase RcsC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1274 PF00512: HisKA" amino acids 347 to 418 (72 residues), 50.5 bits, see alignment 6e-17 PF02518: HATPase_c" amino acids 465 to 573 (109 residues), 94.8 bits, see alignment E=1.6e-30 amino acids 1019 to 1134 (116 residues), 62.2 bits, see alignment E=2.1e-20 PF00072: Response_reg" amino acids 637 to 749 (113 residues), 95.6 bits, see alignment E=7.3e-31 amino acids 1157 to 1262 (106 residues), 63.3 bits, see alignment E=8e-21 TIGR00229: PAS domain S-box protein" amino acids 783 to 894 (112 residues), 55.6 bits, see alignment E=3e-19 PF00989: PAS" amino acids 785 to 874 (90 residues), 28.1 bits, see alignment 6.1e-10 PF08448: PAS_4" amino acids 790 to 890 (101 residues), 42.3 bits, see alignment E=2.8e-14 PF08447: PAS_3" amino acids 805 to 875 (71 residues), 41.8 bits, see alignment 3.7e-14

Best Hits

Predicted SEED Role

"Chemotaxis protein methyltransferase CheR (EC 2.1.1.80)" in subsystem Bacterial Chemotaxis (EC 2.1.1.80)

Isozymes

Compare fitness of predicted isozymes for: 2.1.1.80

Use Curated BLAST to search for 2.1.1.80

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1274 amino acids)

>MPMX19_04555 Sensor histidine kinase RcsC (Azospirillum sp. SherDot2)
MTADTSRAFLNGPGDMAALMRAKDWAATPFGPVETWSPALRSAIGICLGSRFPIVLYWGP
TRALIYNDAWSPVPGNKHPWALGRPGREVWAEIWDIIGPMFDHVMTAGEATWSEDQLLPL
NRFGYVEECYFYYSYSPVRGEDGRVEGIFTAVTETTQRVLAERRERLLRGVSEATSRARS
AAEACKAAVGCLVTLPEESPFALAYLRDASSGALQRVASEGLPPGGDLAPERTLPDCNPT
PWPFAEALATGAPVTVEGLTLRCPGRLPGTPWPEAVEQALVVPILSARADAPHGFLVTGI
SPRRRIDAPYVTLFERAAGHIATAITNAEAYEEERRRAEMLAELDRAKTAFFSNASHEFR
TPLTLMLGPVEDMLQRSPAEDRAAVPVERDALELVHRNGQRLLRLVNALLDVSRIEAGRM
KARFEPVDLAAFTAELASSFRSAMDRAGLDYRIDCPPLPEPVWIDRDLWEKIVLNLISNA
FKYTLSGGVAVAVQPVGERAVLTVRDTGVGIPAEEQPRVFDRFHRIEGQSGRTHEGTGIG
LALVKDLTQLHGGTVALDSDVGRGSTFTVTLPFGNAHVPATERPAGPIPASTATRADAFV
AEALHWLPQEQGEQSAPALVDGASSGPAPERMRNATILLADDNADMRSYVERLLTAAGYR
VETVGDGVAAVETAKAAPPDLVLSDVMMPHLDGFGVIAALRGHPHTRDLPIILLSARAGE
ESSIEGLQAGADDYLVKPFSARELLARVEGALRLAELRRETAEQLRQANEALERRVEERT
RERDRFWRLSRDPFLVADREGRWLSASPAWTEILGWTEAEMLGRTSEWMEHPDDCDKTRR
EVRKLAGGGSTFRFENRFRTRGGHYRDFAWTATPADELMFCVARDVTEEKERAATLRKTE
EQLRQSQKMEAVGQLTGGMAHDFNNLLQAMSSCLQLVSRRVGHAPEVEPILDAGRQAVDR
GASLIRQLMAFSRRQSLQPEAFDVRDRLLGLRLFLDRALRADIGLEFALQGGLWPVMADP
VQFDLAVLNLATNARDAIDADGAVVVGADNVVLDGMDGLSGEFLKVFVRDSGRGIAPDAL
GRVFEPFFTTKAVGKGTGLGLAQVYGFCRQSGGTATVESVEGKGTVVSLLLPRAEATVAS
ETPNAPPVLPSAADIHVLLVEDDPVVAPVVTAALEDLGYRVTRAATGEEALRRLEEAAVD
LLFSDVVMPGSINGVALAQEARQRWPDLGILLTTGYSEDLAATKSVRVLSKPYRIEDLAH
AIQEELEDGARRRG