Protein Info for MPMX19_04502 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 379 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 44 to 63 (20 residues), see Phobius details amino acids 118 to 139 (22 residues), see Phobius details amino acids 147 to 167 (21 residues), see Phobius details amino acids 198 to 218 (21 residues), see Phobius details amino acids 239 to 266 (28 residues), see Phobius details amino acids 273 to 291 (19 residues), see Phobius details amino acids 295 to 313 (19 residues), see Phobius details amino acids 322 to 349 (28 residues), see Phobius details TIGR03408: urea ABC transporter, permease protein UrtC" amino acids 31 to 344 (314 residues), 367 bits, see alignment E=5.7e-114 PF02653: BPD_transp_2" amino acids 42 to 334 (293 residues), 139.9 bits, see alignment E=4.4e-45

Best Hits

KEGG orthology group: K01998, branched-chain amino acid transport system permease protein (inferred from 44% identity to mdi:METDI1945)

Predicted SEED Role

"Urea ABC transporter, permease protein UrtC" in subsystem Urea decomposition

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (379 amino acids)

>MPMX19_04502 hypothetical protein (Azospirillum sp. SherDot2)
MSKSTLSRSKPYAQLAAYLLFCAVILAVPSFVTDAFLLNKFARYLALGLAAAALALSWGY
AGILNLGQGVSFGIGAYAIAMHLKLKTSPVHTGSAGLPDFMVWNNLDHLPWFWQPFHSSL
FAVAAGILAPVVVALLLGSFMFRARIAGVYVAIITLAMLAVVNLLFIDQQAYTGGFNGIT
DLAWLEAGSVTFDPYSPAFYYLSAGALSLCLLLGLAFTRSKAGLILQAIRNDADRVRFFG
YDVAAYQSLAFAVSAGMAGLAGMLYAMVLEFASPTFMGVPLSLSMVIWAAVGGRGSLLGA
AIGAILVNFMQGSLSESFLDTWQLILGGMFILVVVFLPNGLSSLIGILADRLSRPAGPKA
DAALTDALSEAPHAGRTPS