Protein Info for MPMX19_04501 in Azospirillum sp. SherDot2

Annotation: Lipopolysaccharide export system ATP-binding protein LptB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 249 TIGR03411: urea ABC transporter, ATP-binding protein UrtD" amino acids 3 to 242 (240 residues), 322 bits, see alignment E=1.3e-100 PF00005: ABC_tran" amino acids 20 to 173 (154 residues), 110.1 bits, see alignment E=6.9e-36

Best Hits

KEGG orthology group: K01995, branched-chain amino acid transport system ATP-binding protein (inferred from 60% identity to aaa:Acav_3684)

Predicted SEED Role

"Urea ABC transporter, ATPase protein UrtD" in subsystem Urea decomposition

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (249 amino acids)

>MPMX19_04501 Lipopolysaccharide export system ATP-binding protein LptB (Azospirillum sp. SherDot2)
MAYLELHGLEVSFDGFKAVNGLDLAVERGELRCLLGANGAGKSTTLDLICGRTQPTGGRI
LLDGQDITSAPEYRRARHGVGRKFQVPSVFKELTVRENLEVAQSRHPSPARTIRLFPGLR
LDRRIAEVLEIVELADELDTRAAFLSHGQTQWLEIAMLLVQDSALILMDEPTAGMTIQET
GKTSRIFQRLRGRHTLIVVEHDMGFVREIAETITVLHQGKRLSEGSIRQVEEDPKVREAY
LGSGGISHA