Protein Info for MPMX19_04440 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 571 TIGR00229: PAS domain S-box protein" amino acids 18 to 127 (110 residues), 45.5 bits, see alignment E=3.9e-16 amino acids 139 to 249 (111 residues), 57.2 bits, see alignment E=9.6e-20 amino acids 262 to 373 (112 residues), 53.4 bits, see alignment E=1.4e-18 PF08448: PAS_4" amino acids 22 to 127 (106 residues), 46.4 bits, see alignment E=1.3e-15 amino acids 143 to 249 (107 residues), 49 bits, see alignment E=1.9e-16 amino acids 265 to 368 (104 residues), 43.6 bits, see alignment E=9.6e-15 PF13426: PAS_9" amino acids 23 to 117 (95 residues), 33.1 bits, see alignment E=1.7e-11 amino acids 151 to 247 (97 residues), 43.5 bits, see alignment E=1e-14 amino acids 273 to 368 (96 residues), 46.1 bits, see alignment E=1.5e-15 PF00989: PAS" amino acids 30 to 118 (89 residues), 27.7 bits, see alignment E=6.9e-10 amino acids 146 to 242 (97 residues), 28.9 bits, see alignment E=3e-10 amino acids 254 to 367 (114 residues), 41.4 bits, see alignment E=4e-14 PF08447: PAS_3" amino acids 34 to 119 (86 residues), 43.3 bits, see alignment E=1.1e-14 amino acids 157 to 241 (85 residues), 65.3 bits, see alignment E=1.5e-21 amino acids 278 to 363 (86 residues), 51.6 bits, see alignment E=2.8e-17 PF13188: PAS_8" amino acids 147 to 175 (29 residues), 14.8 bits, see alignment (E = 6.8e-06) PF00015: MCPsignal" amino acids 423 to 565 (143 residues), 75.8 bits, see alignment E=1.1e-24

Best Hits

KEGG orthology group: K03406, methyl-accepting chemotaxis protein (inferred from 77% identity to azl:AZL_a03490)

Predicted SEED Role

"Methyl-accepting chemotaxis protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (571 amino acids)

>MPMX19_04440 hypothetical protein (Azospirillum sp. SherDot2)
MFLFTKSTSYDRAKLDALDKSQAIVEFTMDGVVVDANRIFLDAMGYSLEEVRGQHHRKFV
DPVEAGGADYRRFWDELRAGRFQSAEYRRITRFGEEIWLRATYNPVLGASGRVTGVVKFA
TVVTDEKLRAADSNGKLAAIDRSQAVIEFALDGTIQTANQRFLDLTGYRLEELQGRHHRM
FLDKADAAEPAYAAFWDKLGRGEHQSGEFRRLTKSGAQVWIQATYTPILDPTGKPWKIVK
FATDVTEQRLRNADFRAQIEAINRSQAVIHFKPDGTILDANDNFLKAMGYRLDEVVGQNH
RLFVSPEQQASAEYSQFWEILRSGKFHTSLYRRRARNGSDVWINASYNPVLSETGEVLKV
VKFATDVTGMIKSRLEAIEFSKRTVQKVIEVGDSVERMCGSATQISTDILASRKVVDEID
RRTSAADSATGRLNEAAAAMDGVAKFIDAIASQIKLLSLNATIEAARAGEAGRGFAVVAT
EVKSLAEQTSGATERIGVEIVAMQEVVRQVVEALGGIARSVDSVKSTVHGVAAGAEEQMS
LSDGVAANMREARNGVEAINRNLQEMLIKAQ