Protein Info for MPMX19_04336 in Azospirillum sp. SherDot2

Annotation: Cytochrome c2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 126 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF00034: Cytochrom_C" amino acids 26 to 124 (99 residues), 32.6 bits, see alignment E=8.6e-12

Best Hits

Swiss-Prot: 49% identical to CYC_CRIFA: Cytochrome c from Crithidia fasciculata

KEGG orthology group: None (inferred from 94% identity to azl:AZL_a04380)

Predicted SEED Role

"Cytochrome c2" in subsystem Soluble cytochromes and functionally related electron carriers

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (126 amino acids)

>MPMX19_04336 Cytochrome c2 (Azospirillum sp. SherDot2)
MKKLLMGVAAIAAVVMGAGAAQAADAAAGKDVFKVCMACHTAEQGKNKVGPSLFGVVGRP
AASIEGFKYSAPMKEKGAGGLVWTAENLDAYIKAPKEIVPGGTMAFAGLKDDAKRADLIA
FLSEQK