Protein Info for MPMX19_04325 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 225 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 54 to 74 (21 residues), see Phobius details amino acids 93 to 114 (22 residues), see Phobius details amino acids 126 to 148 (23 residues), see Phobius details amino acids 176 to 193 (18 residues), see Phobius details PF02163: Peptidase_M50" amino acids 129 to 183 (55 residues), 29.6 bits, see alignment E=2.3e-11

Best Hits

KEGG orthology group: None (inferred from 98% identity to azl:AZL_a04500)

Predicted SEED Role

"FIG004556: membrane metalloprotease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (225 amino acids)

>MPMX19_04325 hypothetical protein (Azospirillum sp. SherDot2)
MEEWIFQVTAVALPAILAITMHEAAHGFVAWRLGDDTAYRLGRVTFNPIRHIDPFGTVLL
PALMYFTTGFVFGWAKPVPVNFARLDHPRRDMVWVALAGPGTNFLLAVASAVIWRLVNPE
NSYIELWIRSAAEVSVLVNVILMVFNLIPLPPLDGGRVAVGILPDVLAVPLAKLERFGLL
ILMAAFFLLPMLGRQIGMDLSVMHWVLGPPVDAVIDFIRVLTGND