Protein Info for MPMX19_04316 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1261 transmembrane" amino acids 1156 to 1179 (24 residues), see Phobius details PF13476: AAA_23" amino acids 18 to 216 (199 residues), 75.3 bits, see alignment E=1.5e-24 PF13558: SbcC_Walker_B" amino acids 1131 to 1203 (73 residues), 38.9 bits, see alignment 1.2e-13

Best Hits

KEGG orthology group: K03546, exonuclease SbcC (inferred from 80% identity to azl:AZL_a04590)

Predicted SEED Role

"Exonuclease SbcC" in subsystem DNA repair, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1261 amino acids)

>MPMX19_04316 hypothetical protein (Azospirillum sp. SherDot2)
MRILAVRGANLTSLDGPFAIDFDREPLRRAGLFAITGPTGAGKSTILDALCLALFDSMPR
LPEGRGEMLGPEGDPNSIRTTDVRTILRRGAGFGWAEVDFIGIDGEAYRARWEVRRARQK
AQGALQQQSMSLSSLDGERRFGDGKKSVLEEIERRLGLSFEQFRRAVLLAQGDFATFLKA
PPRDRSALLELLTGTEIYSRLSIAAHERATAEKQALDRLVTHGGGIGVLGDDDRTALQAE
AGEAAKAVRSGEQALALAQAALAWHERDSQLAAAESKAVAAAEAAEHAWSDAEERRNAAV
ALRGMQPLRPVLADADRARNEAAEAAAAVERSETALAAARLAVDEATGRHGEARRRFEVA
CAGQARAEPDLDRAVDLDGRIATLTGEQGTADAAAKVAVQRSIALRKAMQDIDATLSSAR
SDAARLEVWLREQAGFAAVAGQWERWDRLLARIVADGRSGKAAAQERQRLERELAATEAA
ASTMEGRLTEARERCRSAEKALENLRGITVPSLEEARQARSEAGRRRDGLLALLTTGEAR
QRLEAERTAADGERLRLLGEAERDGTSARELAESRAGRQAAVDEAERTLQRLLLAQREDV
ESLRGRLAEGEPCPVCGSADHPWAGAGATPLGRVTRDQETHLAGLREALAATVARHAALE
AAELAARKGAEALTARLSAMAREADGLDARWAAQAAAVDWEAGGGTLTDTHTDILMAIRG
QVDAVDRRMAAIAQDEEQALDHRRRLDAAQLEHRRLETAAAGLASECEATRQRLADGRQA
LALAAAALERAEADRDSALAELADGLAGEAGWQALLERDPEGYRAALARRVSDYREKSDG
LAHAAREVERASGERAVQSAEREAAQRAEDEARNRAADLAGRLAEARTARGAVLGGRPVS
EVRTALAAQKHEAEALVEKATFARQDAIARLSAAEQERETRGEAARRCVDKAKAAGERLD
RAATGRGVGLEEIRRLLAAPESELDAEELALAVLERARGDAALVVAERRRQRGDHHAAGR
PAQSVEEAGAAAERIRAVLERDRDRLGSARGRLEADDANRQRLAGLMADIEARQARCALW
GKMAQLIGSSTGQKMRNFAQSLSLDLLLTHANRHLEDLARRYRLERVAGADLEIQVVDRE
MGDERRGVHSLSGGELFLVSLALALGLSAMAAGTSGGIGTLFIDEGFGTLDPDSLDVALS
CLEALQAGGRQVGVISHVPAMVERIGTQIRVLPLGGGRSRVTVQSVAGTALGLAMEEVEG
V