Protein Info for MPMX19_04294 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 339 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 39 to 59 (21 residues), see Phobius details amino acids 70 to 89 (20 residues), see Phobius details amino acids 95 to 114 (20 residues), see Phobius details amino acids 123 to 141 (19 residues), see Phobius details amino acids 169 to 190 (22 residues), see Phobius details amino acids 221 to 241 (21 residues), see Phobius details amino acids 258 to 283 (26 residues), see Phobius details amino acids 304 to 325 (22 residues), see Phobius details signal peptide" amino acids 32 to 32 (1 residues), see Phobius details PF02653: BPD_transp_2" amino acids 38 to 314 (277 residues), 134.3 bits, see alignment E=2.3e-43

Best Hits

KEGG orthology group: K01998, branched-chain amino acid transport system permease protein (inferred from 96% identity to azl:AZL_a05320)

Predicted SEED Role

"Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (339 amino acids)

>MPMX19_04294 hypothetical protein (Azospirillum sp. SherDot2)
MSGLSGVMFSGITGRGMALLVLAALGLAVAPFVADRYLVSVLTTVLWFAYVGQAWNVMMG
FSGLLSLGHALYVGLGAYVSAALFVHFGIGPWAGMVLAMLVAVVAGCVIGFLGFRFGVKG
VHFALLTIAFAEVARIGFDHITWVGGSGGFFLPVEAGASDPLNLRGSPVLFYYVALALVV
AALFLSRALLHSRLGYQWLAVREEPDAAEASGVDLFRARMTAVAVSSALTALGGVFQAFY
FNNLFPEQVFSMGRSIEIILPAIVGGIGTLVGPILGAFILTPLGEALTFLIEAGGLDLPG
LKQLFYGAALVVIVVFRPEGVWPWLARRLRLVRQPGEGA