Protein Info for MPMX19_04277 in Azospirillum sp. SherDot2

Annotation: Protein YhgF

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 784 PF09371: Tex_N" amino acids 8 to 192 (185 residues), 253 bits, see alignment E=4.7e-79 PF16921: Tex_YqgF" amino acids 323 to 448 (126 residues), 171.9 bits, see alignment E=2.4e-54 PF14635: HHH_7" amino acids 462 to 553 (92 residues), 27.5 bits, see alignment E=1e-09 PF12836: HHH_3" amino acids 488 to 552 (65 residues), 102.4 bits, see alignment E=3.6e-33 PF17674: HHH_9" amino acids 558 to 627 (70 residues), 80.9 bits, see alignment E=3e-26 PF00575: S1" amino acids 646 to 717 (72 residues), 75.9 bits, see alignment E=7.9e-25

Best Hits

KEGG orthology group: K06959, uncharacterized protein (inferred from 97% identity to azl:AZL_a05420)

Predicted SEED Role

"Transcription accessory protein (S1 RNA-binding domain)" in subsystem ZZ gjo need homes

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (784 amino acids)

>MPMX19_04277 Protein YhgF (Azospirillum sp. SherDot2)
MLSISQRIADELSVRESQVASAIAMLDEGSTVPFIARYRKEATGGLDDTQLRTLEERLGY
LRELEDRRASILSTIQDQGKLTPELERQIKQADTKTRLEDLYLPYKQKRRTKAQIAREAG
LEPLADALLADPKKQPDMEAAAFVSADKGVADVKAALDGARHILVERFGEDAELVGRLRT
AMADKGVVTSKVIEEKKAEGAKFSDYFDFSENWSKLPSHRALALFRGRAQGVLDIRLDLP
VEEGQPHPAEGTIAVHTGIRDQGRPADKWLSDVVRWTWKLKIGPHIETDLMGSLRERAED
EAIRVFARNLHDLLLAAPAGQRVTIGLDPGIRTGVKVAVVDATGKLVETTTIYPHPPRND
WDGSLAVLAALAARHKAELISIGNGTASRETDKLAADLMKRHPELSLTKLVVSEAGASVY
SASETAAHEFPTLDVSLRGAVSIARRLQDPLAELVKIEPKSIGVGQYQHDVAGGKLARSL
DAVVEDCVNAVGVDLNTASIPLLTRVSGLNETIARNIVEHRDRNGAFRSRKQLLDVARLG
PKTFEQAAGFLRIRDSENPLDGSAVHPEAYPVVQRIVKTTGRDLGSVIGDARFLRGLNAE
EFTDERFGVPTVEDIIKELEKPGRDPRPEFKTATFKEGVEELKHLQPGMMLEGVVTNVTA
FGAFVDIGVHQDGLVHISQLANSFVKDPHTVVKAGDVVKVKVLEVDIPRKRIALTMRMGE
EAPRPARREEQRRDERGPGRPPQQQDRRPAAPAAKAAPKPAKAPEPVNSAFAEAFARAQS
GKKK