Protein Info for MPMX19_04268 in Azospirillum sp. SherDot2

Annotation: 2-keto-3-deoxygluconate permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 338 transmembrane" amino acids 12 to 29 (18 residues), see Phobius details amino acids 42 to 64 (23 residues), see Phobius details amino acids 76 to 95 (20 residues), see Phobius details amino acids 101 to 119 (19 residues), see Phobius details amino acids 139 to 161 (23 residues), see Phobius details amino acids 167 to 186 (20 residues), see Phobius details amino acids 194 to 211 (18 residues), see Phobius details amino acids 223 to 246 (24 residues), see Phobius details amino acids 255 to 275 (21 residues), see Phobius details amino acids 287 to 310 (24 residues), see Phobius details TIGR00793: 2-keto-3-deoxygluconate transporter" amino acids 1 to 312 (312 residues), 467.1 bits, see alignment E=1.7e-144 PF03812: KdgT" amino acids 3 to 312 (310 residues), 387.3 bits, see alignment E=2.8e-120

Best Hits

Swiss-Prot: 63% identical to KDGT_ENT38: 2-keto-3-deoxygluconate permease (kdgT) from Enterobacter sp. (strain 638)

KEGG orthology group: K02526, 2-keto-3-deoxygluconate permease (inferred from 65% identity to cro:ROD_34801)

MetaCyc: 61% identical to 2-dehydro-3-deoxy-D-gluconate:H+ symporter (Escherichia coli K-12 substr. MG1655)
TRANS-RXN-113

Predicted SEED Role

"2-keto-3-deoxygluconate permease (KDG permease)" in subsystem D-Galacturonate and D-Glucuronate Utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (338 amino acids)

>MPMX19_04268 2-keto-3-deoxygluconate permease (Azospirillum sp. SherDot2)
MNIKSRIDRIPGGMMIVPLFLGACLNTLAPNTGKFFGSFTNGLITGTLPILSVWFFCIGA
SISLKATPLVLRKSGVLVSVKILTAAMAGVIASWFIPAEGITSGFFSGLSVLAIIAVMND
TNGGMYMALMQQYGTKEEAGAFCLMCLESGPFMTMVTLGIAGLAAFPWQTMVGALLPFLI
GFALGNLDKDLRAFFTQGVSVMVPFFAFALGNNLNFSTILNTGLLGIVLGLGVIAVTGFM
LVLADILLAKGNGTAGIGAASTAGAAVTVPPIIASIEPTFAPVAPSATALIATSVVVTAL
LTPPLTAWWARRFGVLSPRYRAAEAAKLAQPVGIAAAE