Protein Info for MPMX19_04256 in Azospirillum sp. SherDot2

Annotation: Photosystem I assembly protein Ycf3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1339 PF13432: TPR_16" amino acids 10 to 69 (60 residues), 22.9 bits, see alignment (E = 7.2e-08) amino acids 77 to 137 (61 residues), 37.1 bits, see alignment 2.7e-12 amino acids 144 to 199 (56 residues), 17.6 bits, see alignment (E = 3.3e-06) amino acids 215 to 276 (62 residues), 20.6 bits, see alignment 3.6e-07 amino acids 255 to 302 (48 residues), 26.7 bits, see alignment (E = 4.5e-09) amino acids 283 to 331 (49 residues), 21.4 bits, see alignment (E = 2e-07) amino acids 384 to 427 (44 residues), 16.9 bits, see alignment (E = 5.2e-06) amino acids 418 to 465 (48 residues), 22.2 bits, see alignment (E = 1.2e-07) amino acids 791 to 851 (61 residues), 21.9 bits, see alignment 1.4e-07 amino acids 930 to 978 (49 residues), 16.4 bits, see alignment (E = 7.4e-06) PF13181: TPR_8" amino acids 71 to 103 (33 residues), 15.7 bits, see alignment (E = 9.3e-06) amino acids 107 to 137 (31 residues), 12 bits, see alignment (E = 0.00015) amino acids 247 to 276 (30 residues), 12.9 bits, see alignment (E = 7.3e-05) amino acids 345 to 376 (32 residues), 12.8 bits, see alignment (E = 8e-05) amino acids 414 to 445 (32 residues), 20.3 bits, see alignment (E = 3.2e-07) PF13374: TPR_10" amino acids 75 to 100 (26 residues), 15 bits, see alignment (E = 1.5e-05) amino acids 277 to 304 (28 residues), 16.1 bits, see alignment (E = 6.5e-06) amino acids 349 to 374 (26 residues), 16 bits, see alignment (E = 6.8e-06) PF07719: TPR_2" amino acids 107 to 137 (31 residues), 25.5 bits, see alignment (E = 6.8e-09) amino acids 414 to 445 (32 residues), 25.7 bits, see alignment (E = 5.7e-09) PF13414: TPR_11" amino acids 112 to 153 (42 residues), 35.7 bits, see alignment (E = 3.9e-12) amino acids 394 to 427 (34 residues), 27.3 bits, see alignment (E = 1.6e-09) PF13424: TPR_12" amino acids 246 to 304 (59 residues), 33.4 bits, see alignment (E = 3e-11) PF13176: TPR_7" amino acids 279 to 308 (30 residues), 17 bits, see alignment (E = 3.6e-06) amino acids 415 to 446 (32 residues), 19.3 bits, see alignment (E = 6.6e-07) amino acids 789 to 820 (32 residues), 15.5 bits, see alignment (E = 1e-05) amino acids 959 to 992 (34 residues), 14.1 bits, see alignment (E = 3.1e-05) PF00515: TPR_1" amino acids 414 to 445 (32 residues), 29.1 bits, see alignment (E = 4.4e-10)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1339 amino acids)

>MPMX19_04256 Photosystem I assembly protein Ycf3 (Azospirillum sp. SherDot2)
MNTADWFAEALRHHQDGALDAAEPLYRRVLQAEPLHADALHLLGVLNHQRNNNLQAVELI
AKAVDLAPGVADYHANLGIVLQRLDRLAEAEAAQRRALERDPGHVGAHFNLGLVLAAQGR
LAEAADQYAEAARLSPDLADAHLNLGAALQGLGRADDALASHTRAADLLPGDPRPWTNRA
VSLRQLGRLDEAVEALRMASALGGGAGDASALSALAAALHAAGRMEDSAERYADALRLEP
RDPFCLNGLGLCLKALGQLDDAATCFDAATAIQPDHADALDNLGSVRIAQGRPAEAEALH
RQAVHHRPDFAGAWNNLGNARHAAGRTADAWRAWHVAVALAPALAETHTNLGNALRSAER
FTEAERSQRRAIRLAPLESPSRNNLGHLRQGRHDYAGAADCYRSALALDPAYGEAWSNLG
LARQRLGDSGEAERCYDRALTLRPDLSLCHFNKGLLRLEAGDLDRGWPGYAWRFGSGQVG
QGRQPRAPAWRGEDLTGRRLMIWGEQGVGDTILFSALCPELAGRAVSTILEIDRRLVPLF
ARSFPTLRVRAEAMDGQGREAMAIPDYDRHVPMGSLPRVLRRRLADFPARPSWLVPDAGL
VERWRERLAVLGPGLRIGIGWRSQMMTSERSAAYLPLDAWAPLFALPGIHWVMLQYGEVE
EEVRQAEKRFGIRLHRWDDLDRKDDFDGVAALIAGLDLVISPAMSVGELAGALGTPVWRF
GTRDWTQLGAGVRPWYPSMRLFQPRPGEPLSATMADMARALRSLFPQRMPSPPQAEGLER
GIIPDGERLAAQAVALHRQGRFAKAETLHRQAVAMAPTQPAAWTNGGLTLLRLGRIKAAI
HWHRLAVTLNPAFAEALGNLGVALQADAAAPEAATLHRRTTRLRPMQAEGWGNLAAALLA
ARRFAEAANACTRAAALAPALAGVLTTAGAAAKGLGRFAEAARQSRRSLRLVPASPKGWS
NLGMALAGLGRWDDALYAHRHAMALAPDLPDVLVNHGHTLLMRGERRLAALLADRTLRLA
PGRAEARMNRALLRLADGDLDGGWADYAHRFATGDAVSRRLDIPEWQGEPLAGRRILVWG
EQGLGDEILFGTALPDLLGQAGTVIVECDPRLARLFARALPAAEVRAPSADPRGADCHAP
LGSVAARLRPDLRRFRATSPLLAADPGLAAGWRERLSTLGPCLRVGICWRSSRMTADRAG
AYSRITQWSPVFGIPGITFVSLQYDGHDAEREEALHRFGTVLHHWPDLDQRNDLDGVAAL
MSGLDLVISAPTAVGELAAALGVPVWRIAGAGDWSALGTAVRPWFPTMSLIGRSGDHDAA
LAAVAQRLRRLADDRSRSG