Protein Info for MPMX19_04007 in Azospirillum sp. SherDot2

Annotation: Glutathione transport system permease protein GsiD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 295 transmembrane" amino acids 34 to 55 (22 residues), see Phobius details amino acids 96 to 121 (26 residues), see Phobius details amino acids 133 to 154 (22 residues), see Phobius details amino acids 160 to 176 (17 residues), see Phobius details amino acids 215 to 238 (24 residues), see Phobius details amino acids 260 to 283 (24 residues), see Phobius details PF12911: OppC_N" amino acids 19 to 71 (53 residues), 61.3 bits, see alignment 6.5e-21 PF00528: BPD_transp_1" amino acids 112 to 295 (184 residues), 104.6 bits, see alignment E=5.6e-34

Best Hits

Swiss-Prot: 61% identical to GSID_PECAS: Glutathione transport system permease protein GsiD (gsiD) from Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)

KEGG orthology group: K13891, glutathione transport system permease protein (inferred from 96% identity to azl:AZL_a08280)

MetaCyc: 60% identical to glutathione ABC transporter membrane subunit GsiD (Escherichia coli K-12 substr. MG1655)
RXN0-11 [EC: 7.4.2.10]

Predicted SEED Role

"Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)" in subsystem ABC transporter dipeptide (TC 3.A.1.5.2) (TC 3.A.1.5.2)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.4.2.10

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (295 amino acids)

>MPMX19_04007 Glutathione transport system permease protein GsiD (Azospirillum sp. SherDot2)
MTTTDATGVAAATHEAVRSPLREFWRKFRRNRTAMAAGFCLLALVLAAAAAPWIAPFDPA
AFDYDRILEGPSADHWAGTDAYGRDILSRILWGARISLAVGLLSVLLGGVAGVALGLIAG
FRGGWIDSLIMRVCDVLLAFPGILLAIGIVAILGPGIENVIYAVAVFSVPVFARLVRGST
LSLKRAVYVDAARAIGVRDRLLMVRHILPGTLPSVIVYVSMRIGTSILTAASLSFIGLGA
QPPSPEWGAMLADGRSYIGVASHVTFYPGLAIFLTVLAFNLLGDGLRDALDPKLR