Protein Info for MPMX19_03968 in Azospirillum sp. SherDot2

Annotation: Type I secretion system ATP-binding protein PrsD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 589 transmembrane" amino acids 27 to 50 (24 residues), see Phobius details amino acids 67 to 86 (20 residues), see Phobius details amino acids 141 to 160 (20 residues), see Phobius details amino acids 165 to 186 (22 residues), see Phobius details amino acids 254 to 272 (19 residues), see Phobius details PF00664: ABC_membrane" amino acids 157 to 288 (132 residues), 22.4 bits, see alignment E=8.8e-09 PF00005: ABC_tran" amino acids 355 to 503 (149 residues), 75.6 bits, see alignment E=6.5e-25

Best Hits

KEGG orthology group: None (inferred from 96% identity to azl:AZL_a02660)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (589 amino acids)

>MPMX19_03968 Type I secretion system ATP-binding protein PrsD (Azospirillum sp. SherDot2)
MPVSTKSNSMRQPGNDKPEASFNRGYFTRILVSTFIFSATINALMLAMPLYSLQVFSRAI
PSGNYDTLAMLTVIVVMALTLSGLLEMVRSRLLARAGNALEVRWRRRLTADALDAAGRGR
PDNGPLADLIELKGAFSRPSLPALMDLPWAPLYVIGIYVIHPMLALVLVVSMLIMAVMGW
IGYVAVKDINDESKLPAGRAQKLFEALASRSDTVRGLRMGNASLDAVNRDFLTASAMQGQ
GYERSAAIGAATKWVRMVLQIAVTGIGAWLVIEQHLSFGGMIATSMLVGRGLAPIEQTAG
AWGGLVRSAQAVRRLLPLLKRLSREPERPSVPVESERLTVENLLFVSPRDQKPILRSVTL
SVEPGETVCIAGPNRSGKSVLARLLAGVALPSAGTVRLGGLSVATLTPDSPDQGIGYLPQ
QVDLLPGSIADNIARFTTATREQVEEAAKAVGLHEWIESLPMGYETEVNDPLSPITGASA
RLIGLARAAFGQPPLLVLDEPTAGLDELGIKAVRAFVAASKERGATTIVMTHAPIFVDMS
DHTYVLKNGMAMELPRPEQQQAQPGAVNLARLRNLGPQGPSAATAGAAG