Protein Info for MPMX19_03914 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 168 transmembrane" amino acids 19 to 38 (20 residues), see Phobius details amino acids 56 to 76 (21 residues), see Phobius details amino acids 88 to 107 (20 residues), see Phobius details amino acids 112 to 130 (19 residues), see Phobius details amino acids 136 to 157 (22 residues), see Phobius details PF07331: TctB" amino acids 23 to 162 (140 residues), 67.9 bits, see alignment E=5.4e-23

Best Hits

Predicted SEED Role

"Tricarboxylate transport protein TctB"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (168 amino acids)

>MPMX19_03914 hypothetical protein (Azospirillum sp. SherDot2)
MSNAPVQGGGAGAPLSTKIANLVIAVVLIAVAAAAIASTGDFPKTMLAADVGPARFPIIH
ASVLIVLCLILIANTLRMPTIADDTPPVGVAGYAGVALGILATAACLYAMEYVGYAVATV
VYMAALMWLMGQRSPLWNPVIAVVVTAVIYFTFQSALQVPLPVGSLFE