Protein Info for MPMX19_03910 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 587 transmembrane" amino acids 21 to 42 (22 residues), see Phobius details amino acids 79 to 100 (22 residues), see Phobius details amino acids 110 to 134 (25 residues), see Phobius details amino acids 159 to 181 (23 residues), see Phobius details amino acids 189 to 208 (20 residues), see Phobius details amino acids 214 to 236 (23 residues), see Phobius details amino acids 257 to 279 (23 residues), see Phobius details amino acids 307 to 327 (21 residues), see Phobius details amino acids 338 to 360 (23 residues), see Phobius details amino acids 394 to 416 (23 residues), see Phobius details amino acids 427 to 451 (25 residues), see Phobius details amino acids 462 to 482 (21 residues), see Phobius details amino acids 514 to 537 (24 residues), see Phobius details amino acids 559 to 579 (21 residues), see Phobius details PF00528: BPD_transp_1" amino acids 112 to 281 (170 residues), 30.2 bits, see alignment E=1.8e-11 amino acids 411 to 581 (171 residues), 40 bits, see alignment E=1.8e-14

Best Hits

KEGG orthology group: K02053, putative spermidine/putrescine transport system permease protein K02054, putative spermidine/putrescine transport system permease protein (inferred from 49% identity to ebi:EbC_38370)

Predicted SEED Role

"Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1)" in subsystem Polyamine Metabolism (TC 3.A.1.11.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (587 amino acids)

>MPMX19_03910 hypothetical protein (Azospirillum sp. SherDot2)
MSAVLLHGADEGGLRQRLRFGPLWLAAPGIAFLAVFFLYPVLRLLGLSVQDADTGAWTGE
HYARIVDTGVYFRVLMGTFRIAGLTALFSLLLGYPLAYWLAQLPERKRGVMILAVMVPFW
TSYLVKTFAWMVILGRTGVIGGLLAAGGLPQPEMLHNEFGVMIGMVHAMLPLAVLTMLPV
MTGIDRRLVQAAETLGAAPGHAFWLVYFQLSLPGIAAAGLLTFISSLGFFIVPALLGGPQ
QTMLAQLIIAQIQEMLNWAFAGALATFMLAAALVTCWVYDRIFGLSTLSGEGSRRKKGGG
SLRKAGQGILAALAALTAAAARVTAPVLGERGRDRLPAVYSTLVLVFLVAPAIVVVPIAF
TSSPFLDFPPPGYSLKWFEVYFGSDLWLGATLRSFGVAFATAILATLIAGLAALALARST
SRWRGAIFALFLAPMIVPRIVIAVGLFYLFAQIGLVATDLGLVIGHTVLALPFAFVAIAA
VVKGHDWRLDQAAATLGANRVQTLMRVTVPLIRGGLVAAFLFAFITSFDELTVAIFVSGG
VKTTLPKQMWDDMILQLNPTLAAVSVVVFLIVMALLLIAERLRRSGR