Protein Info for MPMX19_03876 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1293 PF13692: Glyco_trans_1_4" amino acids 192 to 321 (130 residues), 33.1 bits, see alignment E=4e-11 PF00534: Glycos_transf_1" amino acids 193 to 301 (109 residues), 27.3 bits, see alignment E=1.5e-09 PF04724: Glyco_transf_17" amino acids 489 to 702 (214 residues), 95 bits, see alignment E=2.9e-30 PF13432: TPR_16" amino acids 843 to 906 (64 residues), 26.2 bits, see alignment 5.7e-09 amino acids 948 to 995 (48 residues), 22.5 bits, see alignment (E = 8.2e-08) PF01075: Glyco_transf_9" amino acids 1205 to 1249 (45 residues), 27.7 bits, see alignment (E = 1e-09)

Best Hits

Predicted SEED Role

"FOG: TPR repeat"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1293 amino acids)

>MPMX19_03876 hypothetical protein (Azospirillum sp. SherDot2)
MTVKIAFIDPAGGDYTPGTPRHRPLGGSQSALCYLTEALAAAGHAVTMVNGTRTAVTVRG
VRCLPIASIRLEDLCDFHVVVFLNGCDREFLLRLRAKLGGDRKLILWTQHAVDQPAVANL
ADAGLRDCLDGIAFVSRWQMDGYLNAFPFDPTVCRVMRNGIAPAFANLFGPDEDILAAKP
WPPILTYTSTPFRGLDVLLDSFSLIRAAIPGTRLRVCSSLEAYQVSAGQDPFIALYQRCR
ETEGVEYLGGLGQVELAGAMREATCLAYLNRFAETSCIAVLEALAAGCLVVSSQLGALPE
SGAGFARLIPVPDDPQEHARRYAEAAVAALRDLRDDPIGVGRRLRAQVEHANAGTIWDVR
ARGWMDWFKELLAPVSPAPFSLAPASLPSVSTGGATAVTARIVSAQQQLMEALGAHLNSG
GDQRLADPVWRAEARRMIELVERSLHLDHNDEEARTGVWSALRGYDAWLAYRTALPELPP
PSPLPPGGRRVFDCFQFYNELDLLEVRLAELYPVVDRFVLVEATHTHAGAAKPLYYADNR
ARFAAYADKIVHVVVAEDPGGFAWNREAYQRDAILRGLGDCRPSDMILISDADEILRAPV
VERLRWEMDEGAGGGAGTGATLFAPHLDIFLYFLDLKAPDPWISVAAAPWELIRRIGANR
ARYLAKQGIGRVIPDAGWHFTWMGGAARFRAKLEAFAHREMMAGFDRDPQANQARLDRFY
ATGRFDDGVLPGIWTGLRRMPIDGHYPARIRETLARFRHLGWIAPQAEPAPETLIENGRA
REREGDGTAAEALWRRAAALDPTNIEAFHALAERLLARNATAEALQPLRCCTRLDPEGSF
HLFKLARSLLLLRRYEAGVAVLIDLVRREPEEHRAYGNLAVALKNLGLHERAVAVGRRAL
ALMPADAGLLNNLGLALSMRVGGDEAAFDALSRAMVLEPDHAETLMNRALVLRSLHRLDD
AETACRRLVAQRPEDPGAHTLLATCLLMRGDLAPGFRAYEWRTQLADGQVEARGLPTPPW
SGGALDGRRILLHDEQGLGDAIQFARYAPLLARRGAHVIVQCRDALVRLLATLPGVATVV
GHSAPTPQHDGHAALMSLPHLLGTTLATVPAEVPYLAAEPALVGMWRDRLGPVRAGLHVG
LVWAGNADLPDDAKRSPGLKPLLPLLDLPGIAFVSLQKGGGRADLEQLGGRLPAGFHDVG
DGLDDLADTAAVVAQLDLVISVDSAVAHLAGALGRPVWTIVRAESEWRWMLERTDSPWYP
TMRLFRQARAGDWSDVVAALCTALQREVREPRR