Protein Info for MPMX19_03866 in Azospirillum sp. SherDot2

Annotation: Ribose import permease protein RbsC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 334 transmembrane" amino acids 20 to 40 (21 residues), see Phobius details amino acids 48 to 69 (22 residues), see Phobius details amino acids 73 to 117 (45 residues), see Phobius details amino acids 125 to 146 (22 residues), see Phobius details amino acids 165 to 186 (22 residues), see Phobius details amino acids 215 to 237 (23 residues), see Phobius details amino acids 245 to 264 (20 residues), see Phobius details amino acids 271 to 293 (23 residues), see Phobius details amino acids 299 to 321 (23 residues), see Phobius details PF02653: BPD_transp_2" amino acids 44 to 308 (265 residues), 100.7 bits, see alignment E=4.1e-33

Best Hits

Swiss-Prot: 35% identical to RBSC_ECOLI: Ribose import permease protein RbsC (rbsC) from Escherichia coli (strain K12)

KEGG orthology group: K10440, ribose transport system permease protein (inferred from 38% identity to tte:TTE0764)

MetaCyc: 35% identical to ribose ABC transporter membrane subunit (Escherichia coli K-12 substr. MG1655)
ABC-28-RXN

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (334 amino acids)

>MPMX19_03866 Ribose import permease protein RbsC (Azospirillum sp. SherDot2)
MMALTGARPRRFSGRLNPPAAVWVVLLLFCVFALSVPRFASTGNLENLLRVGSILGIAAC
GQTIVLILGGIEFSFGASAALASVVTVLALPSAGVAGGFAAGATAVLLVGLVNGTLVARF
SLPPFLVTLGMLMVAGGGAAVLAGGLPIDAPPSDAFSWPARGRVAGIPVPILAAAASFAL
LHLLLAHTRAGRLWYLVGANGTAARLSGITVWRSVLAGYLLAGAFCALAAVILTSRVASG
QPGLAPNLPFETIAACAVGGIPLAGGQGRAVQTLCGVLVIAMLNNAVVLLNLPVAYQQLM
IAAVILGAVMLQQAPRLLLLLPVRPARQPEEDRS