Protein Info for MPMX19_03714 in Azospirillum sp. SherDot2

Annotation: Sensor histidine kinase RcsC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1257 PF13185: GAF_2" amino acids 42 to 185 (144 residues), 50.5 bits, see alignment E=1.4e-16 PF01590: GAF" amino acids 44 to 184 (141 residues), 52.7 bits, see alignment E=3.8e-17 TIGR00229: PAS domain S-box protein" amino acids 201 to 325 (125 residues), 45.9 bits, see alignment E=3e-16 amino acids 456 to 579 (124 residues), 62.5 bits, see alignment E=2.2e-21 amino acids 580 to 708 (129 residues), 54.5 bits, see alignment E=6.3e-19 PF00989: PAS" amino acids 206 to 315 (110 residues), 37.1 bits, see alignment E=1.6e-12 amino acids 458 to 569 (112 residues), 22.9 bits, see alignment E=4e-08 amino acids 584 to 698 (115 residues), 27.3 bits, see alignment E=1.7e-09 PF08448: PAS_4" amino acids 212 to 320 (109 residues), 51.1 bits, see alignment E=8.2e-17 amino acids 469 to 574 (106 residues), 32.7 bits, see alignment E=4.3e-11 PF13426: PAS_9" amino acids 219 to 318 (100 residues), 32.2 bits, see alignment E=5.8e-11 amino acids 485 to 570 (86 residues), 23 bits, see alignment 4.3e-08 PF08447: PAS_3" amino acids 230 to 313 (84 residues), 56.4 bits, see alignment 1.6e-18 amino acids 354 to 438 (85 residues), 41.3 bits, see alignment 8.6e-14 amino acids 485 to 566 (82 residues), 47 bits, see alignment 1.4e-15 amino acids 607 to 694 (88 residues), 74.5 bits, see alignment 3.7e-24 PF00512: HisKA" amino acids 721 to 789 (69 residues), 64.1 bits, see alignment 5.3e-21 PF02518: HATPase_c" amino acids 836 to 957 (122 residues), 98 bits, see alignment E=2.5e-31 PF00072: Response_reg" amino acids 987 to 1094 (108 residues), 76.1 bits, see alignment E=1.3e-24

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1257 amino acids)

>MPMX19_03714 Sensor histidine kinase RcsC (Azospirillum sp. SherDot2)
MPPDRTSPTDTPSSSQLAASLTRRERQHDLLARFGMAALKSTDIANLLQQATSLCAEALE
AEFCKALERVKEADGTERLLVRAGVGWRPGVVGKRSVGADLASPAGYALKTGEPVIANDL
GAESRFRCPDLLADHGVRRAIDVIIRGEGAPFGVLEVDSSREGRFDAADAAFLQGVANLL
GGAIDRANDAAERRRTEALLRENEAQFRGLADLIPQLTWMADASGAIYWYNRRWYDYTGA
GPGETEGWNWRSVHHPDHVERASDGFFRAIRTGEPWEDTFPLRGRDGRYRWFLSRAVPVS
GPDGRILRWLGTNTDVTEQRKAESRIMEAERRLQLALRAARIGAWSWNLEEDRIEADGRL
REIFDFTADQPINGSDVTGRVHPDDQPRIGGIIDTARRERGEYDAEFRILLPSGEIRWAV
ARGVVTDSTPERSLTLIGVTWDTTDAKRAEEKLRLSEERFRSLVEATAAIVWYTSGAGRF
EAPQPSWSNFTGQTFDKLKGIGWVEAIHPDDRPHTSEAWRAARAGRTIYKAEHRLRRYDG
VYRDMLVRAVPLLDAGGAVQEWVGVHTDITTRRRAEEALRETEERYRLAAQATNDAIWDW
NLSSDRIHWNEAVRTLFGYGADTGETSASWWMDHIHPDDQDHVVTGIHAVIDGGGTRWND
EYRFRRADGSYASILDRGFVLRSPIGQPLRMIGAMQDISVRKRAEEELEAARFTAEEANR
AKSLFIANMSHELRTPLSAVIGYTEMLEEELADLGVDSMLPDLEKIEANARHLLNLINGV
LDISKIEAGKMEVHGEDADIAELTREVAATVEALVSKKGNRLAVEVADGLGTMHTDVVKV
RQCLFNLLSNAAKFTEDGTITLSVERAAPGPLDADDDTTADMVVFRVTDTGIGMTPEQVR
RLFERFMQADSSTTRRFGGTGLGLAITKAFADMLGGGISVDTASGQGTSFTLRLPADLRH
GRLAGSTDADPLSVDEVTPSQAARETILIIDDEQAMRELLARFLHREGFGVALAADGQTG
LSIARQIRPRAILLDVMMPRTDGWSVLSVLKAEPDLADIPVIIISSRREKGLALSLGAAD
YFTKPVDWQRLHRVLSGLGGQAPGTALVMMEADETRTLLAAELGRDGWQIAEAETEEDAF
SRLATTLPTVILLDPVMAGLDGFAFLKALDRNPDWRDIPVIVVVAQPIGRDETEELRGRV
QDIIPMAEDGADGVIEELKEAIARLRPAPPDRGPQERSPQDRSMDAGATNGTGGTDG