Protein Info for MPMX19_03641 in Azospirillum sp. SherDot2

Annotation: Sensor histidine kinase RcsC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 582 transmembrane" amino acids 14 to 32 (19 residues), see Phobius details amino acids 154 to 177 (24 residues), see Phobius details PF17152: CHASE8" amino acids 39 to 139 (101 residues), 65 bits, see alignment E=1.3e-21 PF00512: HisKA" amino acids 221 to 283 (63 residues), 28.1 bits, see alignment E=3.4e-10 PF02518: HATPase_c" amino acids 327 to 439 (113 residues), 71.7 bits, see alignment E=1.3e-23 PF00072: Response_reg" amino acids 463 to 567 (105 residues), 52.4 bits, see alignment E=1.1e-17

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (582 amino acids)

>MPMX19_03641 Sensor histidine kinase RcsC (Azospirillum sp. SherDot2)
MTDLAGFWRHTPRLTALAVIVLLVAGGLMALASENAYRDERTGDVEVQTRILAATVTAAL
SFNDRTSASEYLAALSASPEFEAAGVYDGSGALFASYTAGGMAPMQATAEPPGHHFDGDH
LTVTVMVVQDGRAIGSVSLRTQVEPFARRAERYVGMALLLAMTLLIVLVLGAAQAALARA
NHDLAERARDLSAANRALNAEIAERERVEAALRQSQKMEAMGQLTGGIAHDFNNLLQALS
SCLQLVGRRAKEPSIQPLLETGQQAIDRGAKLVQQLMAFARRQTLRPEPMDVRDRLLGMA
DLLTRAIRADITLETQVEPGLWPVEVDPTQFELAILNLAVNARDAMPEGGRLRVTARNRL
ADGASGDLVQVTVSDTGTGMEAEVKARVFEPFFTTKEVGKGSGLGLAQVYGFTRQSSGRV
EIDSAPGQGTAVSLFLPRTVKPVAAHAKERSLDTARGAGRRLLLVEDDPIVGSMVAAALD
EMGYAVLRAGNAEEALGLLNDRDLRIDILFSDVVMPGAMNGIDLAHTARRLRPGLPVVLT
TGYSEDIARIDGVRVLPKPYRVGELAELLESALGADGAGVKV