Protein Info for MPMX19_03622 in Azospirillum sp. SherDot2

Annotation: Ribose import ATP-binding protein RbsA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 504 PF00005: ABC_tran" amino acids 20 to 169 (150 residues), 107.7 bits, see alignment E=8e-35 amino acids 270 to 421 (152 residues), 75.7 bits, see alignment E=5.8e-25

Best Hits

Swiss-Prot: 44% identical to RBSA_CHRVO: Ribose import ATP-binding protein RbsA (rbsA) from Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757)

KEGG orthology group: K10441, ribose transport system ATP-binding protein [EC: 3.6.3.17] (inferred from 70% identity to bpy:Bphyt_0962)

Predicted SEED Role

"Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)" in subsystem D-ribose utilization (TC 3.A.1.2.1)

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.17

Use Curated BLAST to search for 3.6.3.17

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (504 amino acids)

>MPMX19_03622 Ribose import ATP-binding protein RbsA (Azospirillum sp. SherDot2)
MSLHVAFDGITKEFGPVRVLHGVSFDLHPGRVHGLLGENGAGKSTLMKILAGYHAPTFGT
LSIDGEAVTFRNSRDAEQRGIVLIHQELSLADDLTVAQNMFLGHEIKRGWLLDDRKMREQ
AANALRQVGFDRDPDTKVRDLIVAEKQLVEIAKAQLRNARLLIMDEPTASLTPSECDRLF
GLIDRLRRDGVTIVYISHKLDEVERITDEVIVMRDGRFVARAPTAETPRQRMATLMVGRE
LTDMFPDKRMPALGKPLMAVRGLTVPGWAEDVSFDLHPGEILGFAGLVGAGRTELFEGIL
GLRPRSGGTVEIEGRPVSLRNPREAMRNGLTYLSEDRKGKGLHVTMGLRDNLTLMTLRHH
AQPLLSPASEDRALEHAVANFGIRGNPQGTASSLSGGNQQKLAIAKFLEPDPRVFVLDEP
TRGVDVGAKRDIYFLIARLAAEGRGVIVISSELIELIGLCHRVIVMRGRRVTATVPADRL
SEEELIAHAIGTNAGTDIGAHARH