Protein Info for MPMX19_03579 in Azospirillum sp. SherDot2

Annotation: Sensor histidine kinase RcsC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 545 PF00512: HisKA" amino acids 181 to 243 (63 residues), 30.4 bits, see alignment E=5.1e-11 PF02518: HATPase_c" amino acids 287 to 411 (125 residues), 65.8 bits, see alignment E=7.1e-22 PF00072: Response_reg" amino acids 434 to 538 (105 residues), 65.2 bits, see alignment E=8.6e-22

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (545 amino acids)

>MPMX19_03579 Sensor histidine kinase RcsC (Azospirillum sp. SherDot2)
MPMRGSILVLAPDGRDAEVIGAVLADIGLAMQPCADLPELCRRLGDDVGALMLSEGVLTD
IDPLTAWLEAQPRWSDLPIVILTSRRSRQAGRGRQAFFQSLGNVTLLDRPLHREALQSAA
QAALRSRERQYRTRSHLHEITQASSRLEERIAERTQALQAEMADRRRAEEQLHQAQKMEA
LGQLTGGVAHDFNNLLQGIVSCLAVLAPTVPDGTPRELFEAANRSIERGARLTQSLLSFA
RRQTLMPEPTDLGELLTGMSSLLERSLGGQISVTIQVPSGLPAALIDRAQLESAILNLAI
NARDAMPSGGRLSLTASVAQIGDGETGRPAAGPAELRAGTYVAIRVADTGTGIDPAVLPH
VFEPFFTTKPLDKGSGLGLSMVQGMATQSGGGVHIDSSLGGGTAITLYLPSVAAVTGPPA
RLAADVERGEGRTVLLVEDDAIVRMGTMALLESQGHHVIEADSGETALALLQDGAEIDAL
VTDFAMPGMNGAEVVRTVRTLRPGLPALIVTGYADTPDLGEAVRLLRKPFSPNQIAEQLA
AMLAE