Protein Info for MPMX19_03534 in Azospirillum sp. SherDot2

Annotation: High-affinity branched-chain amino acid transport system permease protein LivH

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 310 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 40 to 57 (18 residues), see Phobius details amino acids 60 to 83 (24 residues), see Phobius details amino acids 95 to 113 (19 residues), see Phobius details amino acids 144 to 164 (21 residues), see Phobius details amino acids 193 to 216 (24 residues), see Phobius details amino acids 218 to 219 (2 residues), see Phobius details amino acids 225 to 258 (34 residues), see Phobius details amino acids 279 to 300 (22 residues), see Phobius details PF02653: BPD_transp_2" amino acids 8 to 296 (289 residues), 125.5 bits, see alignment E=1.1e-40

Best Hits

KEGG orthology group: K01997, branched-chain amino acid transport system permease protein (inferred from 96% identity to azl:AZL_a06760)

Predicted SEED Role

"High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (310 amino acids)

>MPMX19_03534 High-affinity branched-chain amino acid transport system permease protein LivH (Azospirillum sp. SherDot2)
MSMLLVQALNGLQFGVLLFLVAAGLSLVFGVMDLINLAHGVQYMLGAYVAATLGVWTGSF
WLGALLALPVALLVGLALEWLVFRHLYRRDHLSQVLATFGVILTVEEATRALWGSAPQTV
LEPSGLTGGPMGGVEIVPGLLYPTYRLVIIGVGIVVPLLLWFLVERTRAGMLVRAGATHP
AMVSALGVDIRRLFTVVFAFGAMLAGFAGALASPIFPVAPGMGDTVLILCFVVIVIGGVG
SIRGAFIAALLVGLLDSVGRAMLPDLLRLLLDPSSARQTGAALASMLVYIVMAAILFFRP
AGLFPGGRSA