Protein Info for MPMX19_03511 in Azospirillum sp. SherDot2

Annotation: NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 549 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 51 to 76 (26 residues), see Phobius details amino acids 83 to 107 (25 residues), see Phobius details amino acids 127 to 143 (17 residues), see Phobius details amino acids 149 to 169 (21 residues), see Phobius details amino acids 181 to 201 (21 residues), see Phobius details amino acids 232 to 254 (23 residues), see Phobius details amino acids 267 to 288 (22 residues), see Phobius details amino acids 300 to 319 (20 residues), see Phobius details amino acids 331 to 355 (25 residues), see Phobius details amino acids 361 to 379 (19 residues), see Phobius details amino acids 390 to 411 (22 residues), see Phobius details amino acids 430 to 453 (24 residues), see Phobius details amino acids 474 to 492 (19 residues), see Phobius details PF00361: Proton_antipo_M" amino acids 145 to 440 (296 residues), 175.3 bits, see alignment E=8.9e-56

Best Hits

Swiss-Prot: 53% identical to HYFF_ECOLI: Hydrogenase-4 component F (hyfF) from Escherichia coli (strain K12)

KEGG orthology group: K12141, hydrogenase-4 component F [EC: 1.-.-.-] (inferred from 97% identity to azl:AZL_b04380)

Predicted SEED Role

"Hydrogenase-4 component F"

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.-.-.-

Use Curated BLAST to search for 1.-.-.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (549 amino acids)

>MPMX19_03511 NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic (Azospirillum sp. SherDot2)
MTAMVPSILPPLLLIGPLAVALFLLTLPWFRESLPEAFATDTGSVTLLERIHLGSIGYVF
LLSIAALIQVLSSGAISAFGDWLFVDALGAVFMMLIGVVGLMTGLYSIAYIRHDLESGAI
DAGKVRIYYGFFSLFLFTMLLAVTANNIIMMWAAIEATTLGSAFLVGLYGQKSSLEAAWK
YVVICTVGVAFGLYGTVLVFSNAADVLADPHQAVLWTALVGHAAELDPMLVKLAFVFALI
GFGTKAGIFPMHAWLPDAHSEAPSPVSGLLSGVLLKCALLIVIRFYVITVGTVGTGFPQM
LLLTLGLLSVGVSSLLFFVQQDLKRKLAYSSIENVGLIVVALGVGGPLGIAAALLHTINH
SVTKALFFCSAGNVLMKYGTRDLRAVKGVLRVAPATGLLMMGCALALAGFPPFNIFVSEF
MVFMAGLNEGYGWIMALCALFLCITIAGLVKIVADSVLGKSPETMAKGDVGWRALAPLGV
LAALVLTLGFAVPQPLSTLVQQATTVVMNGDSRPVVAAPWQTYDRPTYDTVRAGGQLVTG
SLSQTEISK