Protein Info for MPMX19_03505 in Azospirillum sp. SherDot2

Annotation: putative formate transporter 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 302 transmembrane" amino acids 40 to 63 (24 residues), see Phobius details amino acids 75 to 103 (29 residues), see Phobius details amino acids 118 to 141 (24 residues), see Phobius details amino acids 170 to 189 (20 residues), see Phobius details amino acids 199 to 223 (25 residues), see Phobius details amino acids 250 to 275 (26 residues), see Phobius details PF01226: Form_Nir_trans" amino acids 21 to 274 (254 residues), 230.3 bits, see alignment E=1.1e-72

Best Hits

KEGG orthology group: None (inferred from 96% identity to azl:AZL_b04320)

Predicted SEED Role

"Formate efflux transporter (TC 2.A.44 family)" in subsystem Fermentations: Mixed acid

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (302 amino acids)

>MPMX19_03505 putative formate transporter 1 (Azospirillum sp. SherDot2)
MADPASKDTPVLGMDAYSPAEIQDKVEKLGVKKATMPFLPSFMLAVVAGGGIGLGGMFFV
IVLADPALSFAVQRILGGLVFSLGLAIVMVGGAELFTGNCLIVMARANGQISTAQVLRNW
ATIWIGNAVGAMGLVFLIYMAHHTEMNNGAVGAAVLKLAIGKIAPDAVTIFFKGILCNLL
VCLAVWLAYAGRTVTDKIVALTLPVAAFVAAGFEHCIANLYFLPLAYVLKVTGHVPAGLD
VSTITAGGILHNLLFATLGNIVGGSVFVGGIYWLIYRKGLGGLTPLPAQKPLPSMGQPAA
TH