Protein Info for MPMX19_03494 in Azospirillum sp. SherDot2

Annotation: Regulatory protein AtoC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 468 PF00072: Response_reg" amino acids 28 to 137 (110 residues), 91.8 bits, see alignment E=1.1e-29 PF00158: Sigma54_activat" amino acids 167 to 333 (167 residues), 234.9 bits, see alignment E=1.5e-73 PF14532: Sigma54_activ_2" amino acids 168 to 338 (171 residues), 84.4 bits, see alignment E=3.2e-27 PF07728: AAA_5" amino acids 191 to 309 (119 residues), 40.8 bits, see alignment E=8e-14 PF00004: AAA" amino acids 191 to 321 (131 residues), 27.2 bits, see alignment E=1.6e-09 PF02954: HTH_8" amino acids 425 to 466 (42 residues), 53.9 bits, see alignment 4.3e-18

Best Hits

KEGG orthology group: None (inferred from 66% identity to azo:azo0071)

Predicted SEED Role

"Sigma-54 dependent response regulator"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (468 amino acids)

>MPMX19_03494 Regulatory protein AtoC (Azospirillum sp. SherDot2)
MPTDTPPPDDAAIPSAAAAEEPATAPSVLIVDDEEGIRNFLSRSLERRGWRVTTTGSAED
AALHLERHCVDLIILDIALPGQSGLDWLKELQAAGFGGDVILITAFADIDTAIEALRAGA
ADLILKPFRVEQIVSAIARCMERTRLQRENFVLRRQLAKRRGTTDEIVGRSAAILRLRAL
IERVAPSPSTVLIEGESGVGKELVARALHTRSHRAERPFVALNCAAVSADLVEAELFGHL
RGAFTGAKEARKGLFYYAHGGTLFLDEIGELPLALQSKLLRVLEERRIRPVGGEQELPVD
VRVVAATNRDLKAEVAAGRFRADLFYRLAVMTLRVPPLRERGDDVVELARRFMGVLSLRL
GVPPLDIDPPLEAALIAHGWPGNVRELRNLVERALLFGEFPLEDLGLSVCVAPEGAGADA
AGGQTLAEVEKRHILAVLADCGGNRARAAALLGVSRKTLDRKWAEWGV