Protein Info for MPMX19_03373 in Azospirillum sp. SherDot2

Annotation: Type I secretion system membrane fusion protein PrsE

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 467 transmembrane" amino acids 24 to 43 (20 residues), see Phobius details amino acids 55 to 73 (19 residues), see Phobius details TIGR01843: type I secretion membrane fusion protein, HlyD family" amino acids 54 to 467 (414 residues), 370.1 bits, see alignment E=7.8e-115 PF00529: CusB_dom_1" amino acids 67 to 417 (351 residues), 32.3 bits, see alignment E=1.9e-11 PF13533: Biotin_lipoyl_2" amino acids 100 to 133 (34 residues), 27.5 bits, see alignment 5.2e-10 PF16576: HlyD_D23" amino acids 287 to 418 (132 residues), 30.8 bits, see alignment E=4.4e-11 PF13437: HlyD_3" amino acids 320 to 421 (102 residues), 60.1 bits, see alignment E=7.8e-20

Best Hits

KEGG orthology group: K02022, (no description) (inferred from 42% identity to mag:amb3159)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (467 amino acids)

>MPMX19_03373 Type I secretion system membrane fusion protein PrsE (Azospirillum sp. SherDot2)
MKPLPLLTRKRAASPTLPPGLSPSLNLGAAAAAAAPALPFATATAPESESRFGDGLFAVS
IAAFLAALGWASIAELNVSSSAPGDVVPLAYNQSVQHFEGGIVRDILVQEGDSVKAGQVL
VELDQTKTRADLEELRLRLGSLSADIARLEAEVTRRDSIDFPETLTRERPDLVAQTRDLF
RARRDRLASDIDIQRQDIVQREQQMAAVRARISGSQVAQGLIREQLSISESLLKREITNR
MKHLELLRDDARITGSIAEDRATLAQAEAALAEARSKLVWIGRKYEEEGRNALDEARRNH
NELSQRLTRYQDSLDRSSMRAPMDGIVKTLAVSTKGAVVKAGETVVELVPRDGNLVVDAR
LPVQDIGYVRADQPVVVTLAGSDASRFGHIEGRVRTISPDTLLDANKQSYYKVRVELPVT
RFDYGGKTYELFPGVRVTCSILTGRRTILDYVFSPVLNGLQHAMQER