Protein Info for MPMX19_03372 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1029 signal peptide" amino acids 1 to 45 (45 residues), see Phobius details transmembrane" amino acids 688 to 706 (19 residues), see Phobius details amino acids 720 to 739 (20 residues), see Phobius details amino acids 750 to 770 (21 residues), see Phobius details amino acids 794 to 815 (22 residues), see Phobius details amino acids 821 to 848 (28 residues), see Phobius details PF13458: Peripla_BP_6" amino acids 56 to 415 (360 residues), 123.8 bits, see alignment E=1.4e-39 PF00924: MS_channel_2nd" amino acids 841 to 906 (66 residues), 56.5 bits, see alignment 2.4e-19

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1029 amino acids)

>MPMX19_03372 hypothetical protein (Azospirillum sp. SherDot2)
MLSSLQPRSRQPLRWSHMTKKARFALILAAAMLVTVLVSLVVRAGFLGERAGEPLALAVV
GPLSGPDAALGLALRKGAALRADTINAAGGIGGRPVEVRPFDDEGDKGKSLEIARRIAND
PTIVAVVGHTPDATDSAAAIYAQKKIPLIAPRPLVRPTDGTPSPWLFSIGFDRTHEIRFL
ANYVRNVVGEPTVAIIREDSEQAAALAGQFDSILQRFGTKLVNQWTYAPGRGGAGALPVL
AQAVKERMPTGAIVVIGSAVDSARVVVALRDVGVRNLIAGSSEMATAAFRTEIVAQTQAN
PKALTPEAYGHGLLVASPVLFDTANERAQRFYGQYVKRFNAVPDWAAALGADGVDLIAGA
IAASTAGTGKPDGDALRLAIAGHDRAETAVQSTAGTWTFDARGQATLPVMMATYNGLNPV
AALTQLQPIREAGVSNFLEEVQRGRALYVNDRFMYKTDVIYTGVQLHEIRDLNPDANEAT
LNLTIWFRYRGAFNPADVVFTNAVKPVELGKPYREERGEVTTYVAYRIEGRFSLNFSDQR
PPYGSHSVGVSFRHRTQNRNTVMFVTDVLGMSLVNTNDFVEKLKAMAAAETASAADLSLA
DRFRRALEGESESSTLLDQLRAKRVLAPSPGWRLSRAWISQDVTSVSSEGDPNYVGFGRP
QPDFSRVDFGVVATPDAPAARDFIHRDFFVYIAIFSAVLAVFAAFMDRRDRGQFWKIQTL
FMRILSWPLLLMSAGNIVLDQAVATLPASGIAMVVNGINVLWWIVPAILVDRTMERFVWT
PLEIRTQRRIPAIVRRFSTLIVFGFAGCGIMAFVLKQPITSLLAASGLVGMVIGLAIQAN
IANVFSGIILNIERPFQIGDSIQITDVVRGVVVDMTWRTVRVRNVAGFIVAMPNAKVSEA
TVVNFSSVERVSMKLEYFADASIDPGHMGGLLTTALRATDRVMPSDTGGLPFVRYDGFRA
VNGQWLCKYNLFFCVKDHEASFAVPELVWRSVYRTLADAGIDPTPPDLLEAGAAAAVVTA
AIPHATVPA