Protein Info for MPMX19_03362 in Azospirillum sp. SherDot2

Annotation: ABC transporter ATP-binding/permease protein YojI

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 557 signal peptide" amino acids 1 to 34 (34 residues), see Phobius details transmembrane" amino acids 49 to 69 (21 residues), see Phobius details amino acids 124 to 144 (21 residues), see Phobius details amino acids 150 to 170 (21 residues), see Phobius details amino acids 234 to 257 (24 residues), see Phobius details amino acids 264 to 287 (24 residues), see Phobius details PF00005: ABC_tran" amino acids 351 to 483 (133 residues), 84.6 bits, see alignment E=1.1e-27

Best Hits

Predicted SEED Role

"Putative ABC transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (557 amino acids)

>MPMX19_03362 ABC transporter ATP-binding/permease protein YojI (Azospirillum sp. SherDot2)
MDLWRILRREALRNMQPLLLLAVLAAALNLALLTSLNDALLALDDPEGLQRLLIVFLLSA
FLWRIAQGWMMNAASKRMQAALAILRVDLLRRAVAADLPDAMAVGSSRLAQVAGGELQML
AQAVPTLVISFQSVAAILLCLLYLSTLSGAAVLIVLCFLVVGGILIGRSVIRLELMSETI
HEAEGALSERSEHILQTLRECKLNRRRAANALADATTCAEALRKERHRFGAEYSHYFTIS
ELTYYAALAGIIFLLPAVTNTDIATVILAGHAAAFIAYPVITIVASYPSYISAETAARSY
LAVEAELKAGPQAVVPGRGSGSDDPFSTIALEGAIFRHAGRDGTGSFTVGPVDMTVERGS
VVFITGHNGAGKSTLIHMLLGLYPIQRGSLSVDGVTVGPDGLAAHRDRFAVVFSDSHVTR
QLYGAVTLDDGFAEELLDLLEMSDKVAIDGRAFTTVDLSQGQKKRLALIAALLERKPVLV
LDEWAADQSPYFRRKFYREIIPWMKARGITVIAVTHDDAYFDAADVQLQVDRGGIRQLIA
TVPPGGIPAPDLLPVSS