Protein Info for MPMX19_03355 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 2600 2805 PF00109: ketoacyl-synt" amino acids 6 to 256 (251 residues), 174.3 bits, see alignment E=9.3e-55 amino acids 481 to 641 (161 residues), 61.9 bits, see alignment 1.8e-20 PF02801: Ketoacyl-synt_C" amino acids 264 to 377 (114 residues), 112.8 bits, see alignment (E = 2.5e-36) PF07977: FabA" amino acids 1382 to 1508 (127 residues), 25.2 bits, see alignment 2.9e-09 amino acids 1590 to 1726 (137 residues), 109 bits, see alignment 3.8e-35 amino acids 1797 to 1931 (135 residues), 30.4 bits, see alignment 7e-11 amino acids 1976 to 2113 (138 residues), 118.4 bits, see alignment 4.8e-38 PF14765: PS-DH" amino acids 2242 to 2361 (120 residues), 25.8 bits, see alignment (E = 1.8e-09) PF01553: Acyltransferase" amino acids 2528 to 2671 (144 residues), 32 bits, see alignment 2.5e-11

Best Hits

Predicted SEED Role

"omega-3 polyunsaturated fatty acid synthase subunit, PfaB / omega-3 polyunsaturated fatty acid synthase subunit, PfaC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (2805 amino acids)

>MPMX19_03355 hypothetical protein (Azospirillum sp. SherDot2)
MSRVPPIAIVGHGCVLPGALSPAELWRAVVEGRDLLRPVPPGIWRVDTAQALSPQALERS
ATDRGGYVQGFDAVFDPSGFACPAGDLAGLDPLVLWLVHCGREALREAGLTVAPPERCGL
IAGNLSYPTASLSAYAEAVWLDRERPNPANRFSSGLPARLAARALGLDGPAFCLDAACAS
SLYAVKLACDQLRDGHADLMIAAGVNRGDDLFLHMGFTALNALSPSGRSRPFHREADGLI
PAEGAACVVLKRLDDAVRDGNRILGVIRGIGLSNDGRSRGFLVPDAGGQERAMAAAYAQA
GLGPEAVSLVECHATGTALGDATEIASMGRIFRGLDGVPIGSLKSNLGHLIAAAGLAGMV
KAIQAMAAGIRPPTLHADDAPLDGIAASPFRLLNRAEPWEVDGPRRAAISAFGFGGNNAH
LILEEWQPATPSVQVPAVAPPPLRVAVVGLAVVTAADDFAAALAAAPLAGDGQRALDSIT
LDLATARVPPADLRHALPQQLLAMKAVAQAVADAPSLAAATTGVLMGMGCDAEVARRGLG
VRLAGLCGPEASVELGPPLNAAGVIGTMPNIVANRFNAQFDWRGPSHSVSAEELSGLAGL
RIAARALVTGELDAAVVGAVDLSCEPVHRSALAALRPDLTTAGDAAVTLVLRRVECAEAA
GEPIHAILDLSEAGDAEYADFTVAGPQGASPVTRRFGHAHATSGLLHVAAAIVACRGRMQ
PADGSARPRLGAGPLRTRVTVEALGGATDGLLVESGGIVWPALPPPAVRLRWFAAGSRAE
LCGRIRRGADGGQGPVRLSFVCSSGREADTLSRALALAEGRAAVADGIHFREQPLGGTLA
FAFTGAAAAYEGMGRDLFLSMPDVGRAVTARFPVLAHAAERLYGSAAPLDAMAQLQTCAL
LCQTHAEVSRSILGLWPQAMLGLSSGETNALFAAGVWTDMDAMFAEIDASGLYGRHLTGD
CLAASQSWGRTGAADWRNWRLLAPVEEVEAALTGLHRVSITIVNAPQDCVIGGDTESCRQ
AIARLGAHRALPLGQDMVVHCAELEPCAPVWRRIHRRATTPPEGVALYANAFAQAYPPSI
ELCAEALTRQAVERVDFPRTIRRAHDDGVRIFVEHGPRNALTRSIAATLSGRDHLAVSLD
HPGRAPLEQLAHVAAELFAAGLDPAMAEVARRLERPVAAPPAQPLIFPAHAAPVVVTLGQ
VMPPAPPLPPVAGLPPPDLAARRPLDEVPEPVASATVPAQAPPADSPIARILARTAELHT
GYLTIASDLHRTYLHGFGVPTPQSITSVLSRTGRGRGPTEGGEGEGQGENQGPHGSHGSL
DHPSPFPPLRGGPLPSPGTGEGALSPLWDRAQLETLASGKVSDIFGPLFAQQDGYARQVR
MPEPPLLLVDRVVSIAGEPGSMGQGSIVTETDVTPDAWYLHDGRMPVGIAIESGQADLLL
VSWLGADFRNRGERVYRLLGCEMTYHEGGLPKVGDTLRYDIHIDGHARMGEVGLFFFHYD
CRIGDRLVLSVRNGQAGFFTDRELANSGGVLWSAEEDRPRDGARLDPLPCPSRHRAFTAE
QLDLWTAGRAFACFGAGFELAGSHQRTPAIPQGRMRLIDSVTVFEPQGGPWGRGYLRAVS
HVPADAWFYAGHFKNDPCMPGTLMAEGAVQAVATFMAAGGFTIGRDSWRFEPVPDEPARF
VCRGQVIPDAGHRLVYEVFVEEIEDGPTPIVRAALLCSADGFKVFHCRAFAVRLVPDWPL
GQGRHALPARLEAPRIVGTRGDVRGDHEALLACAWGAPSAAFGSMYARFDAGRVPRLPGP
PYHFMTSVVSVNCPAGEPTVGGTILVDCAVEPDAWYFAENAAPVMPFCVLMEVLLQPCGW
LASYMGFALASTEDLAIRNLDGDDARLFAEVTPADACVRTEATLTRFSRAGGITLIAFKV
RAWVDDRPLMELETAFGFFAAAALAKQNGLPPLPDDTARGIPPATPPAEPRRTRLAAGKL
RMVDEVTGWWPQGGAAGLGLARGRQAVDPESWYFKAHFFQDPVQPGSLGVEALLQLLERA
MLLSGLDSEVPSPRFEGAALDEPLRWKYRGQVVPTNRTVSTEIEILRIERDERGILAVAR
GSLWADDLRIYEVDGLAARLVPGDGGDEPGDLRLDLDSAPWLGDHRPTHTAPAVPLTCLA
DAMAAAVPGGRIVALEDVRVQRWVTIPVTLRPEAEPDGRVTLRDGGAAVATGRVIRAADW
PVPPQPFAPLDDAHPSPCPYSAGELFHGPAFQILSDLRTGPRGASATLDAVKAARVPGLI
GPALLDAGLHAMPRHAPELWWGDKAAGMLAYPSAIERLSLFGPTPCDGLIRIEVRPLPLD
GQGRARSRLQWLAGGRVWAEMELADVLFPKGALGKAPALARQAFLRDRQAVPGLRLSRSE
DGITRLNAREVAASNWLPGTLEAIYGVSGSAAEMARAIAAKELAAAHLGVHPGTVTVEDG
IARCPAAPLTPVPLSITQEGTDWLVAGMASAAPDLDPLQRFWRSHLGTGDWPVEDLFLAL
AGEFVGQVRVADADQLARIGARGALFLGNHQVAVESLTFALVGAALTGRPILTVAKAEHR
DTWLGRLLTLSGSAPELRLPPMMMLFDREDPAAMLGLMEQARTAVTRDGLSIMVHAEGTR
SLSCRTPVTRLSGVFLDLAARLEIPIVPVRFAGALPVEPAAGRLDVPLGFARQDIHIGRP
LWPEELASLPLAERKRTVLDAIDGAGPALADELPNQPRPAFEARATALATACGLSPTRAA
ILQAVLNAIPPDRPLAGLARRIAAGENGSENDLWLSALSRWFRAG