Protein Info for MPMX19_03271 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 351 transmembrane" amino acids 21 to 45 (25 residues), see Phobius details amino acids 152 to 173 (22 residues), see Phobius details amino acids 183 to 205 (23 residues), see Phobius details amino acids 216 to 237 (22 residues), see Phobius details amino acids 258 to 281 (24 residues), see Phobius details amino acids 316 to 337 (22 residues), see Phobius details PF00528: BPD_transp_1" amino acids 174 to 344 (171 residues), 63.4 bits, see alignment E=1.2e-21

Best Hits

KEGG orthology group: K02026, multiple sugar transport system permease protein (inferred from 77% identity to bra:BRADO4394)

Predicted SEED Role

"Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)" in subsystem D-ribose utilization (TC 3.A.1.2.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (351 amino acids)

>MPMX19_03271 hypothetical protein (Azospirillum sp. SherDot2)
MTGKLRRLLLARRGGASWHWTDVASYAYLALGVLLMFGPVLWLALSSFKTPAALLEFPPS
LLPMAQSEVSVPGYPQALPLFQVTMEDGSVRELAQVRRVGIVAQMVDPAAPGQTIRVPAD
RRTPVRHMALAVENYTDPLTQFDFLRFLRNSLVVTVVATVITLIINSMAAYALSVYEFRG
KSVAMLGVIGTLMIPITIILAPVYLVVTKLGFVDSLWAVILPGAATPTGVFLLRQYMLTI
PRDLIEAARMDKASEWRIYARIVMPLSMPALAVLAIFSVMWRWNEFLWPLAVLTKTEVHT
LPIALNAFQGELQTQWHYLLAMTVVTLLPVALVFAFLQRFITSGIANTGMK