Protein Info for MPMX19_03242 in Azospirillum sp. SherDot2

Annotation: ABC transporter ATP-binding/permease protein YojI

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 551 transmembrane" amino acids 20 to 44 (25 residues), see Phobius details amino acids 57 to 76 (20 residues), see Phobius details amino acids 129 to 152 (24 residues), see Phobius details amino acids 158 to 175 (18 residues), see Phobius details amino acids 238 to 261 (24 residues), see Phobius details amino acids 273 to 297 (25 residues), see Phobius details TIGR01194: cyclic peptide transporter" amino acids 7 to 548 (542 residues), 716 bits, see alignment E=1.6e-219 PF00664: ABC_membrane" amino acids 28 to 177 (150 residues), 42.9 bits, see alignment E=7.7e-15 PF00005: ABC_tran" amino acids 359 to 491 (133 residues), 94.4 bits, see alignment E=1.5e-30

Best Hits

KEGG orthology group: K06160, putative ATP-binding cassette transporter (inferred from 68% identity to ppw:PputW619_3540)

MetaCyc: 63% identical to ABC-type myristoylated ferribactin transporter (Pseudomonas aeruginosa PAO1)
7.4.2.-

Predicted SEED Role

"PvdE, pyoverdine ABC export system, fused ATPase and permease components" in subsystem Siderophore Pyoverdine

MetaCyc Pathways

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (551 amino acids)

>MPMX19_03242 ABC transporter ATP-binding/permease protein YojI (Azospirillum sp. SherDot2)
MPTPPRTSLAALLQLLRPFWPMLTAATLLGVLGGLSVTGLLATINRILHAGDSPGPGILL
AFAGLCAMALAGSVLSDIGTNRIGQKVIARLRRDLGDRILTAPIDQLERYRGHRLIPVLT
HDVDTISDFAFAFAPLAVSLSVTLGSLCYLAVLSWPMFLATAAAILIGSAVQYVARLRGI
EGFHEARAHEDELQKHYRSLAEGAKELRINRPRRLRLQSEALRGTIDRICDIQIRSINLF
VIAKGFGSTLFFIVIGVALGVEALWPSTDRGTLSGFILVLLYMKGPLEHLIGTLPIVSRA
QVAFRRIADLSAEFASPEPHLLMKDEGGPPTTIDRLELRDARYVYPPAGPGVEPFVLGPV
SLRVGRGEILFIVGENGCGKTTLIKMLLGLYPPHEGQILLDGRPVTPETRDDYRQLFTTI
FADYFLFDDLIQANDSVPDDAQAYLERLEIAHKVSVVDGVFSTTDLSTGQRKRLALLQAW
TEKRPVLVFDEWAADQDPTFRRIFYTELLPSLKALGKTIIVISHDDRYFDVADHLLRLTA
GKVVEDRQPAL