Protein Info for MPMX19_03240 in Azospirillum sp. SherDot2

Annotation: Gramicidin S synthase 2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2000 2195 transmembrane" amino acids 291 to 309 (19 residues), see Phobius details amino acids 564 to 580 (17 residues), see Phobius details amino acids 1362 to 1378 (17 residues), see Phobius details PF00668: Condensation" amino acids 50 to 480 (431 residues), 322 bits, see alignment E=1.2e-99 amino acids 1124 to 1557 (434 residues), 327 bits, see alignment E=3.6e-101 PF00501: AMP-binding" amino acids 510 to 854 (345 residues), 239.3 bits, see alignment E=1.3e-74 amino acids 1582 to 1938 (357 residues), 293.3 bits, see alignment E=5.2e-91 TIGR01733: amino acid adenylation domain" amino acids 531 to 929 (399 residues), 368.3 bits, see alignment E=2.3e-114 amino acids 1601 to 2012 (412 residues), 446.8 bits, see alignment E=3.3e-138 PF00550: PP-binding" amino acids 1014 to 1077 (64 residues), 53.8 bits, see alignment (E = 3.7e-18) amino acids 2096 to 2159 (64 residues), 62.5 bits, see alignment (E = 7.4e-21) PF13193: AMP-binding_C" amino acids 1996 to 2069 (74 residues), 55.9 bits, see alignment (E = 1.3e-18)

Best Hits

Predicted SEED Role

"Non-ribosomal peptide synthetase modules, pyoverdine??" in subsystem Siderophore Pyoverdine

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (2195 amino acids)

>MPMX19_03240 Gramicidin S synthase 2 (Azospirillum sp. SherDot2)
MTSSPSTPSLPSSLDGLSRSQRRALAAVLAAKGIDIHTRFPIPRADRSQPLPLSYAQQRL
WFLWRMDSGGAAYNIPGAIRVTGPLDPALLEAVFAHLADRHEALRTIFAERDGHPVQIIH
PRLTPVLASIDLSALAPADREIRARELARVEALTPFDLGNGPLMRLTLVRLAAEEHLLLV
TLHHIVADGWSVERFLAEFARSYDALRAGRQPDLPALPIQYADYAQWQRDWLEAGERDRQ
LAYWRDRLGTGHPVLPLPLDRPRPAVLGAHGGTVAFRLGAERSRDLKALAQARGVTPFVL
LLAAFKLLLMKHSGETDLRVGVPFANRNRIETEGVVGFFVNTLVLRSGLNSRESFGTLLA
RLRDTALEAQAHQDLPFEQLVEALQPERSLSHNPLFQVKFNYGFDTSTLPAPEGLRLAPE
PNEFLGAHFDLALDIADAPDELHGSMTYARDLFEAASVEGLVADYCGLLDAVLRQPDAPL
WRLRPSGSAPAGESGGWRDPAPGVLELWNARVEADPEAVAVCGGERTLTVRALDGLANRL
ANALREAGIGPGDRVLLGFERSCGLIAGLLGVMKAGAAYVPLDPSQPAERLRRLALSSGA
RCTVAAGATLAAAGATGLSCLDLDGPHVASQPDGFDGPVPAGALPAYVIYTSGSTGEPKG
VVVSHGALGSYLRGVLERLAVPKGTSMAMVSTVAADLGHTVLFGALCHGGALHLADDATA
RDPDRFAAWMAGCGAGVLKIVPSHLRGLLHAARAADVLPRDLLVLGGEACDGGLVERLRR
LRPGLRVLNHYGPTETTVGVLTHEVPPAFPAVIPLGSPLANVRACVLDPDLEPVLAGAAG
ELYVGGDSLADGYLGQPAVTAARFVPDPQPRRPGDRLYRTGDRVRLRRDGLLEFVGRLDD
QVKIRGHRVEPGEVARVLKSLPGLADVLVIAGTAVHGPAAGQLIAYCVPSADAPDIAALR
EAAAGLLPDHMVPAHWLVLDRLPLTANGKPDRKALPVPAAAEPASQTAMTETEQRLAQIW
AEVLKRETVDAGASFFAMGGDSILSLQLIARARKQGLKFTPKQLFEAQSIRALAALLDGR
PQARPQETAPVLSPAPVSLPVSVAGPQAGPEEAAIPAVPSGESLPLSSTQRRLWFLWRLD
PVSTAYTISTALRLRGRLEPESLRRAFALVSGRHETLRTRFVERGGEPRQVIDADAAVDW
TVETLEDAGLLDGRLRGEAARPFDLERGPLLRLRLFRLPDGDGHALSLAMHHIISDGWSM
NVLVDEIARAYALLSAGLPAALPPLPLQYADYAAWQERWMESAEARRQLDYWQGRLGGEQ
PALDLPADRPRPPMQSHRGAAVEFELDASLVAGLAAVGREQGASLFMVLLAAFAALLHRH
SGQRDLRIGVPTANRGRVELEGLVGFFANTQVLRIEPDGRLPFDRFLALVRDEVLAAQGN
QELPFDALVEALQPDRSLDRNPLFQVMASHSRPRSDALRRLPGLDIAEHPRLHHAAQFDL
SLHSEEQADGSLRATLIYATDLFDEDTVQRFRSHLERILHGVAQAPTVTLGYLPILDAAD
WPDVLPRASHPAGPLVPELISEQAGLHGGCPAVSFGGRTLSYAELEAQANRLAHRLQALG
VGPEVTVGVAAERSLELVVGLLAVMKAGGAYLPLDPELPPARLAAMAADGGIALLLTQSH
LAGRLGGEVLPEAVRLLLLDAEDTDAENIGGLPDTPPAAGLRPENLAYLIYTSGSTGTPK
GAGNSHGALLNRLAWMQKAYRLSPGERVLQKTPFGFDVSVWEFFWPLMVGAHLVVAAPGE
HRDAARLVALIREQGIDTLHFVPSMLQAFLEEPGVEHCTSLRRVVCSGEALPAALQDRLF
ARLPQVGLYNLYGPTEAAIDVSHWTCRAGEGGAGGGVPIGVAIDNLRLHVLDECLNPLPA
GAIGELYIAGAGLARGYHRRAGLTAERFVADPFCADGGRMYRTGDLARQRGDGVIEYVGR
IDHQVKIRGLRIELGEIEAVLRGHPAVRDAVVVARDGVGGKRLVGYVAADANAELPRRLR
EHLGRALPDYMVPSHLVVLERLPLTPNGKLDRKALPEPAPDAVVEHVPPSTATEHDVAEI
WRSVLGVERVGAADNFFALGGHSLLAARVAARLRERLEVDLPLRTLFEAPTLAELAARID
REKADGAAEEEIGRMDALLADLEAGFEALPSEAAQ