Protein Info for MPMX19_03239 in Azospirillum sp. SherDot2

Annotation: D-alanine--D-alanyl carrier protein ligase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2000 2257 transmembrane" amino acids 95 to 113 (19 residues), see Phobius details PF00501: AMP-binding" amino acids 38 to 434 (397 residues), 219.7 bits, see alignment E=2.3e-68 amino acids 1182 to 1541 (360 residues), 288.8 bits, see alignment E=2.3e-89 PF00550: PP-binding" amino acids 618 to 681 (64 residues), 52.3 bits, see alignment (E = 2.2e-17) amino acids 2131 to 2195 (65 residues), 56.3 bits, see alignment (E = 1.2e-18) PF00668: Condensation" amino acids 704 to 1153 (450 residues), 316.7 bits, see alignment E=9.9e-98 TIGR01733: amino acid adenylation domain" amino acids 1202 to 1625 (424 residues), 419.8 bits, see alignment E=5.4e-130 PF13489: Methyltransf_23" amino acids 1698 to 1834 (137 residues), 34.6 bits, see alignment 6.6e-12 PF13649: Methyltransf_25" amino acids 1718 to 1825 (108 residues), 28.5 bits, see alignment 8e-10 PF08242: Methyltransf_12" amino acids 1718 to 1827 (110 residues), 49.7 bits, see alignment 2e-16 PF08241: Methyltransf_11" amino acids 1718 to 1828 (111 residues), 30.3 bits, see alignment 2.1e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (2257 amino acids)

>MPMX19_03239 D-alanine--D-alanyl carrier protein ligase (Azospirillum sp. SherDot2)
MDNRSDAAPLSTVSAVRKPAGASVDRSVETLVDTLVGRAAETPGGIALRFIAEGTDDPLS
YAELDRRARAIAVRLRARAGLGDRAVLLLPSGPDYVAAFFGCLYAGVIAVPAYPPESVRP
QHLARLQGILADAQPRFILTDSILYDTLLEACRAMAGGDRMPELLAVDRVDGGLAGDWSM
PPLSGDDVAFLQYTSGSTSAPKGVRVSHGNLIANERLIRGGFGIGPDDCIVSWLPLFHDM
GLIGGLLQPIHAGIPCVLMSPRYFLERPRRWLEAIGRYGGTISGGPDFAFRLCCERIADT
ALEGLDLRSWRLAFSGSEPIRPDTLARFAERFAPVGFDRRSYFACYGLAEATLFVTGGRR
GQGITLAPFDGPELAANRALPPGEAASATVLAGCGHVQPDHPVRLVDPAGGSEVGEGTVG
EIWAGGPSIADGYWRNAEATARSFVERDGTVWLRTGDLGFLKDGELFVTGRLKDMLIVRG
QNIYPQDLERSVEEEVEVVRKGRVAAFAVEQDGREGIGIAAEIGRTVLKLVTPEALCGAI
AAAVADACQEAPVLVALLEPGALPKTSSGKLQRSACRSLLDAGELPAFHVQRRGDAVAAT
DTPVNLRAARSLTGRESEVATVWSEVLGTAVTDAGAHFFALGGNSVSVVQVVARLRERCG
LAADVADLFRHPTLSDFAARLSEAGPATIRAMAPRMGGEERIAEPSAAQARMWFNWKLDP
RDCGYTISGRVQLRGPLRRDAVQAAVDLLVGRHESLRTVFREEAGRPVQVVRPAGTLPVA
VRFADLSGDAGRDGALRRLLEEEVRAPFDLVEGPLMRVQSIACADDDHHLQVSLHHAIAD
GWSMTVLLDEFGEAYAACCGGRAPELPALTVQYADVAQWQRDLLESGEGARQLAYWAGRL
GDRHPVLDLPADRPRSAGGSQRGAAVHCVIDDGLATALRGLARRMGVTLPTLLLASYTAL
LHRYSGQDDIRVGCTLANRRSVDSERLIGFFVNMAVLCADLSDDPAFDMLLRRVGEAALD
AQANQDLPFDRLVEELQPQRDLAHHPLFQAAYDHQWQRLDGLDRLPGLRVEAVEHLQLAT
QFDLILHTTERAGPGGSGPLGAFFTYSLDLFEPESVERMARHWLTLLRGIVADPALPVSR
LPLMDEAETAALVAGWNDPARNPAHPPAPLPVDAPGLHARIAAQAHRHPDAPAVTCDGRT
LSYGELDRRSDRLAWQLRSLGVGPDRLVGLAADRSFDLIVGMLGILKAGGGYLPLDPSYP
ADRLLYMQADSGIGLVVTQAHLRDALPLADGVRAICVGEEPDAPDGPPPDLGRAGSLAYC
IYTSGSTGQPKGVAITHANVLRLFESCPADLRFDGRDVWALFHSYAFDFSVWEIFGALLH
GGRLVVVPYYTSRSPADCFALLRDEGVTVLNQTPSAFRQLVPVALGSPRDALSLRLVVFG
GEALEMESLRGWFEHFGDSRPRLVNMYGITETTVHVTHRPLTMADLPKSGQATDQPEAGA
PVGMPLGDLRWYFLDRHLQPVPPGVAGEIHVGGAGLARAYLNRPALTAGRFVADPFGGSH
GDPGDPGDPGGRLYRSGDLARYWPDGRVEYLGRADQQIKLRGFRIEPGEIEAAVRRQPGV
ADAAVLLRGDGGDRRLVAYAVADEEALRVRPEEQRGDLVGQWNTVFDGTYSRAEAATGPS
FTGWNDSYDDRPIPEPQMREWLDATVARILALKPERLLEIGCGVGLLTQAVAPRCAVYHG
TDFSAQAIADLGAWAAGKPELAHIRLSRREATDFGGMDEGLMGEGGVEEGGYDTVVINSV
AQYFPDGDYLLRVLEGAVRALRPGGRIFLGDLRPLHLQPLFHASVALWRAEAQASPAQLR
ARVARAMAEDGELLFAPGFFQALRGRIPEIGRIDLDLRCGRADNELTHYRFDAVLHVGAE
DLRPAGGWREAGEDLTRLDRLLAEERPAGLRIVGIANRRLARDLAVWMAMSGASTPAAGA
LRERIDRLDPAGADPDAYRALAEAHGYRARVGWSVGPGGAGDAEGRFDVEIFDPARLERH
PIGPEPAVPDGWRTQCSDPLLARQRRQFAPRLLSALRGSLPAHMVPSQMLRVDRLPLTVN
GKLDRDRLADHDQPMQVATAAHVPPESPVEQALAAIWAEVLGVTRVGLDDDFFELGGHSL
LATQVASRIVADLGVTLDIRTLFEATGLRGLARRVEERRAATEPAAASAIEDELAAALKA
IEGLSEAELNALADAAQTGGPQTGGAQTDSANTGIAR