Protein Info for MPMX19_03201 in Azospirillum sp. SherDot2

Annotation: Sensor histidine kinase RcsC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1544 PF01339: CheB_methylest" amino acids 34 to 209 (176 residues), 180.1 bits, see alignment E=1.7e-56 PF03705: CheR_N" amino acids 234 to 283 (50 residues), 31.1 bits, see alignment (E = 7.9e-11) PF01739: CheR" amino acids 297 to 487 (191 residues), 158.9 bits, see alignment E=5.3e-50 PF13596: PAS_10" amino acids 745 to 849 (105 residues), 87.2 bits, see alignment 5.6e-28 PF13185: GAF_2" amino acids 883 to 1027 (145 residues), 40.5 bits, see alignment E=1.5e-13 PF01590: GAF" amino acids 883 to 1026 (144 residues), 31.7 bits, see alignment E=1e-10 PF08448: PAS_4" amino acids 1047 to 1160 (114 residues), 32.5 bits, see alignment 4.4e-11 PF00512: HisKA" amino acids 1179 to 1243 (65 residues), 39.1 bits, see alignment (E = 3.3e-13) PF02518: HATPase_c" amino acids 1288 to 1397 (110 residues), 83.2 bits, see alignment 9.5e-27 PF00072: Response_reg" amino acids 1420 to 1531 (112 residues), 57.2 bits, see alignment 8.9e-19

Best Hits

KEGG orthology group: K13924, two-component system, chemotaxis family, CheB/CheR fusion protein [EC: 2.1.1.80 3.1.1.61] (inferred from 95% identity to azl:AZL_e00580)

Predicted SEED Role

"Chemotaxis protein methyltransferase CheR (EC 2.1.1.80)" in subsystem Bacterial Chemotaxis (EC 2.1.1.80)

Isozymes

Compare fitness of predicted isozymes for: 2.1.1.80, 3.1.1.61

Use Curated BLAST to search for 2.1.1.80 or 3.1.1.61

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1544 amino acids)

>MPMX19_03201 Sensor histidine kinase RcsC (Azospirillum sp. SherDot2)
MMSADEGTDRHCQDIPRMDQDEQRRTRPGPLAIVGIGASAGGLKAITALLRAVPADSGLA
FVVIQHRIPNNERLLADLLKNVTALSVHTAHDGIPLEADHIYIAPAGRLPTMEAGQLRIR
ESRQSVDATLPIDIFFRTLATDQQEKAICVVLSGTGADGTNGLRSIKECGGLVVVQDPTT
ADFDGMPGSAIATGMADYILPPERMPGAIVDFVHQPYIGPATVQKADAPDGALDGILDLL
SAHTKRDHRAYKPRSLIRRIERRMGIHHIADTPEYRAFLGTHPAEIELLSRDILISVTRF
FRDGPAFDILAGDYLLPLVRNQPAGKPIRVWVPACATGEEAYSIAILLMEACTRSGVSPG
FRVFATDVDNRALTVARTGLYPETITVDVSVERLDRFFTKVEDGYKVVKPLRDVVSFAQH
DLLSDPPFSKLDLISCRNMLIYIEPDVQKAIFALFHFALLDNGGLFLGTAENLDTLSDLF
APLSKKWRLYRKIGATRSSAMAVPPTGGRSVVPVPTPPTPLRGTSPADIIRQALLLEYAP
AAVLIDGLHRIQYLFGPTGDFLDLPTGEPPWDLTAMTRGELRLQLRRAVAQALALHGRIQ
ISGIRHKRHGVVVPMTILVIPVRFPRAGSDLLLVTFTVDHAAPSTPAAETAPLPMELDGV
EQLENELRMTREELNDTIEELSATSEALRIANEEILSIGEEYQSTTEELETSKEELQSLN
EELSTLNSQLHEKVDELEATTNDLGNLLSSTDIATVFLSSDLRIKRFTPSATRLFALLPQ
DAGRLITDISRHFSDPCLLPDIRSVLSSLMPSEREVSTDNDATFLRRIQPYRTQNGRGEG
VVITFSDVTPLKRTSLAMALQARQYKLIADLGRKDLIGAEGPETLAEAARLIAEGLGADG
VAILGPGEDPSGRRTGDADDLILLGSADLSVPQEPAVRIPSDMSTLVGRVFRSRQPSIAE
DFATDQRVRSSMALSGSHFVSGLAVPFGGETRGPSILAVLSRTAGRFSDADLEFVQAIAS
VLGLVIERAGVLRTARAERDFAQAIVDTVREPLLVLDEMLRVVGASAAFHRSFATTPDGV
LGVQLAETAGGLLADPELRRALERVIPDGTVIEALELTIGQGVGDQGAEGRRTLLLNARR
LNQAGRLILLAMEDVTEQVRVREALAAAKAAAELASASKTRFLAAASHDLRQPVQALLMF
HHLVAMQPQGEAAAKLLVSMGNALGAMTAMLDDILDVSRLDAGIIQVMLRSCPVQTMIDA
LCAELSPLAEAAELKLHSVRTSLSVRSDPKLLERILRNFIANAIKYTDQGRILVGCRRAG
LNLRIQVWDTGRGIPSNQLASIFEEFHQVDNPERDRRQGLGLGLSIVERLAALLHHPIRV
QSAPGQGSMFEILVPLAGPDDSLPKDEEMVVSDGGNGERVVVIDDDPTVLDGVASFLHEL
GYDVVAASDGDTAVERLGSRVPDLVIADFRLKGTETGSEAIRRLERHFAARLPGILLTGD
TSPARIREASASGFLLLHKPLSPEPLLTAIRHALTDQSLEPGTA