Protein Info for MPMX19_03147 in Azospirillum sp. SherDot2

Annotation: Lipopolysaccharide assembly protein B

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1029 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details PF13432: TPR_16" amino acids 145 to 191 (47 residues), 15.6 bits, see alignment 4.6e-06 amino acids 870 to 930 (61 residues), 29.1 bits, see alignment 2.7e-10 amino acids 902 to 960 (59 residues), 38.1 bits, see alignment 4.2e-13 amino acids 975 to 1025 (51 residues), 22.9 bits, see alignment 2.3e-08

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1029 amino acids)

>MPMX19_03147 Lipopolysaccharide assembly protein B (Azospirillum sp. SherDot2)
MRANLLVVLLILLAGVGASLLLIPHSAELALQKFRDRDYDSARDAYEQRYAAGDRSGATV
MPLTRLTLAQGDVERTIELTEGFLAAEPSSVEARELLDRLYQDAQRPGERLENLKALAEM
RNSADLFRELAYAAGFRNRMAMKAEALVRYCTLRPEDVEAQQELAALLASRGDHAGAVDW
LLRADDRATGNIQPDSRELLMSLLIDLDREDEAYERARRWLGERPTVADMIGLASQLAAA
SRPDLGLRLIEPQVTGPQVTGAQVAGRAPVLALELTYIDLLIATDRREPARARLSALSGP
VEDAQFGRLLALEANAGMPRAALEATRGRDLHLVPDWVLAGLAETALRDGDRAFPDRLYR
ELGDEFLDDYPILAANIALGRGDPAAAAQWAERALAGDGLTPNYRLGAIRILDRTGRRTA
AVAAFDRLPLSGTVPEEALEELAALFIDLDRAPAGLAWFTARRQATQSPAAAQGWARLAA
KAGDPAAVADWLAGQPKLPLALLQDIAGSAAERASANPATDPRANRPAAALALAAAQRAF
ALDPSPRSRLALAGALTATGKPADALPLLAPLLDGGGAEVEAVYIAALDGAGRSEELARH
LTAKLARGTLSDTEQQAIVTMLLDHKAYRAALPLLRAWAERQGGTRSGEDWLSVYADAAA
KANALPDLAVLLQGRAAAAPLAEAEDSLYRDTLTKLGRKADLRRYLLTRATDDRLTADRR
REPVSALLALGDKAGAEQALQRLAAGQGPQSEDFRQLAYLWGPRPPATGLDWIEARAKAA
GAPAEQAAWYDRLAEYGGGRRVIAGLGGQGLGGQGLGGQGSAQAAAPAQPALRTPYIEAL
AAAGKGKELADAVRAALADEASPDRLRRYARLAEQTGQRAAASQAWTALLARKPDDADAL
RQLGMLAYDENRLADAERLLRRYVAAGPDDYEAHYFLGEALTALKRPTVAIPFYRTALSQ
LRARATRGDAVVQTEANLLNRLGKVDDAVALFEGLRKRRPADRQLKADYASMLIENGRLP
EARRVLALP