Protein Info for MPMX19_03070 in Azospirillum sp. SherDot2

Annotation: Inner membrane protein YdcO

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 410 transmembrane" amino acids 20 to 41 (22 residues), see Phobius details amino acids 53 to 71 (19 residues), see Phobius details amino acids 78 to 96 (19 residues), see Phobius details amino acids 102 to 121 (20 residues), see Phobius details amino acids 132 to 168 (37 residues), see Phobius details amino acids 174 to 192 (19 residues), see Phobius details amino acids 204 to 233 (30 residues), see Phobius details amino acids 255 to 284 (30 residues), see Phobius details amino acids 296 to 321 (26 residues), see Phobius details amino acids 327 to 349 (23 residues), see Phobius details amino acids 368 to 390 (23 residues), see Phobius details TIGR00843: benzoate transporter" amino acids 11 to 390 (380 residues), 389.4 bits, see alignment E=9.3e-121 PF03594: BenE" amino acids 19 to 388 (370 residues), 429.4 bits, see alignment E=5.9e-133

Best Hits

Swiss-Prot: 39% identical to YDCO_ECOLI: Inner membrane protein YdcO (ydcO) from Escherichia coli (strain K12)

KEGG orthology group: K05782, benzoate membrane transport protein (inferred from 90% identity to rpd:RPD_2303)

Predicted SEED Role

"Benzoate transport protein" in subsystem Benzoate degradation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (410 amino acids)

>MPMX19_03070 Inner membrane protein YdcO (Azospirillum sp. SherDot2)
MSLHASPSSIRLNDLTHPIVAGLISVIVNYGGTFILVFQAAKVAGLSPELTASWVWSVSV
GVGLTGLFLSWRFREPIITAWSTPAAAFLVTALATTPYAEAVGAYMISAVAFVALGLSGY
FEKVIRLIPPGIASGLLAGILLQFGVGAFGGASVDPLLVGLLIVAYVVLKRFSARYAVVG
ILVLGLVFLLTQSRVDLSGLKLEFAAPVFTIPAFSLNALLSVALPLFLITLTGQYMPGML
VLRNDGFKTSANPIVTVTGLGSLIMAPFGSHAFNIAAITAAIATGREAHEDPRKRWIAGI
AAGCFYVLVGVFGVTLAAVFMAFPATFITTLAGLALLGTIGGSLAGAMADPTSREAALIT
FLASAANIKLLGVGGAFWGLVIGLVAYLVLNGRLPRREQAGLTMTERTAK